CK937473

Overview
NameCK937473
Unique NameCK937473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7118 contig Csv1_Contig7118:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.700e-73
Identity = 135/193 (69.95%), Postives = 156/193 (80.83%), Query Frame = 2
Query:   98 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 676
            +A V DFCVAD K  D PAGY C  PA VT +DFV+SGLG+AGNTT+II AAVTPAF AQFP VNGLG+SLARLDL  GGVIP HTHP ASE+LLVV G + AGF++S  NT Y+KTLKKGDIM+FPQGLLHFQVN G   AL F SF+SP+PGLQI DFALF N+L ++L+ QTTFLD A +K+LK +LGGT
Sbjct:   17 HASVQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLPTELIAQTTFLDAAQIKKLKGVLGGT 208          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.455e-72
Identity = 134/194 (69.07%), Postives = 157/194 (80.93%), Query Frame = 2
Query:   98 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 679
            NA V DFCVA+LK +++PAGYPC+ P  V A DFVFSGLG  GNTT+IINAAVTPAF AQFP +NGLGLS ARLDLA  GVIP+HTHP ASE+L V+ G +TAGF+ SSAN VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+FNS NPGLQI DFALFAN+L ++LV  TTFLD  TVK+LK +LGGTG
Sbjct:   16 NASVQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFV-SSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTELVVGTTFLDATTVKKLKGVLGGTG 208          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.078e-71
Identity = 129/193 (66.84%), Postives = 155/193 (80.31%), Query Frame = 2
Query:   98 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 676
            +A V DFCVAD K  D PAGY C  PA+VT +DFV+SGLG+AGNTT+I  AAVTPAF AQFP VNGLG+SLARLDL  GGV+P HTHP ASE+LLVV G + AGF++S  NT Y+KTLKKGDI++FPQGLLHFQVN G   A+ F SF+SP+PGLQI DFALF N+L+++L+ QTT LD   +K+LK +LGGT
Sbjct:   17 HASVQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQIKKLKGVLGGT 208          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.896e-71
Identity = 128/193 (66.32%), Postives = 155/193 (80.31%), Query Frame = 2
Query:  101 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 679
            A+  DFCVADL  SD+PAGYPC   A V A DF + GL  AGNT+++I AAVTPAFV QFP VNGLG+S ARLD+A GGV+P+HTHPAASE+L V  G V AGFI+SS+NTVY +TL  GDIM+FPQGLLH+Q N+G   A+  V+F+ PNPGLQITD+ALFANNL S +VE+ TFLDDA VK+LK++LGG+G
Sbjct:   23 ALTQDFCVADLTCSDTPAGYPC--KASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLPSAIVEKVTFLDDAQVKKLKSVLGGSG 213          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.730e-70
Identity = 127/193 (65.80%), Postives = 154/193 (79.79%), Query Frame = 2
Query:   98 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 676
            NA V DFCVADL   + PAG+ C  PA V  +DFVFSGLG+AGNT++II AAVTPAFVAQFP VNGLG+S+ARLDLA GGV+P HTHP ASE+L+V  G + AGF++S  NT Y++TL+KGDIM+FPQGLLHFQVN G   AL F SF S +PGLQI DFALF N+L ++++ QTTFLD A +K+LK +LGGT
Sbjct:   22 NAAVQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD-NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLPTEVIAQTTFLDAAQIKKLKGVLGGT 213          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 131/194 (67.53%), Postives = 156/194 (80.41%), Query Frame = 2
Query:   98 NAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 679
            N  V DFCVA+LK +++PAGYPC+ P  V A DFVFS LG  GNTT+II+AAVTP FVAQFPA+NGLG+S ARLDLA  GVIP+HTHP ASE+L V+ G +TAGFISS AN+VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+F+S +PGLQI DFALFAN LS++LV  TTFL  ATVK LK +LGGTG
Sbjct:   16 NDSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS-ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTELVSATTFLPPATVKTLKGVLGGTG 207          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.034e-67
Identity = 127/192 (66.15%), Postives = 150/192 (78.12%), Query Frame = 2
Query:  101 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 676
            A V DFCVAD K   SP+GY C  P  VT +DF F+GLG AGNT++II AAVTPAF   +  +NGLG+SLARLDLA GGVIP+HTHP ASE+L+V+ G + AGFI SSAN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL DA VK+LK +LGGT
Sbjct:   20 ASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFI-SSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDAEVKKLKGVLGGT 210          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.796e-65
Identity = 125/192 (65.10%), Postives = 148/192 (77.08%), Query Frame = 2
Query:  101 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 676
            A V DFCVAD K   +P+GY C  P  VT +DF FSGLG AGNT+++I AAVTPAF   F  +NGL +SLARLDLA GGVIP+HTHP ASE+L+V+ G + AGFI SSAN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL D  VK+LK +LGGT
Sbjct:   20 ASVQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFI-SSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDEEVKKLKGVLGGT 210          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.333e-53
Identity = 104/194 (53.61%), Postives = 136/194 (70.10%), Query Frame = 2
Query:  101 AMVNDFCVADLKL-SDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 679
            A+  DFCVA+L L +D+P+GY C P A VTA DF    L   G      N ++  AFV Q+PAVNGLG+S +R+D+  GGV+P+HTHPA SE+L V+ G + AGFISSS N VY K + KG + +FPQGLLHFQ N+G   A+ F +++S NPGLQI D+ALFANNL +  V + TFL +A V+RLK+  GG+G
Sbjct:   26 ALTQDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTSYVVKGTFLAEAEVRRLKSKFGGSG 219          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.185e-50
Identity = 114/195 (58.46%), Postives = 134/195 (68.72%), Query Frame = 2
Query:   98 NAMVNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFA-LFANNLSSQLVEQTTFLDDATVKRLKAILGGT 676
            NA VNDFCVA+     D+P+G+ C   A VTA DFV+SGL   GNTT+IINAAVTPAFV QFP V GLG++LARLDLA GGVIP+HTHP ASEIL VV G + A FI SS N VY K L  GD+M+FPQGLL FQ  +G   A G       NPGLQI +F   F      + +  TT LD+AT+K+LK+ LGGT
Sbjct:   21 NASVNDFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFI-SSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPGLQILEFQHCFPTIFPPKTIAGTTCLDEATIKKLKSGLGGT 213          
The following BLAST results are available for this feature:
BLAST of CK937473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
AB19A_PRUPE1.700e-7369.95Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL31_ARATH2.455e-7269.07Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
AB19B_PRUPE2.078e-7166.84Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL814_ORYSJ7.896e-7166.32Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
ABP20_PRUPE8.730e-7065.80Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GLP1_BRANA1.261e-6867.53Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL33_ARATH9.034e-6766.15Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_SINAL3.796e-6565.10Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL813_ORYSJ3.333e-5353.61Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI1.185e-5058.46Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_C10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937473 ID=CK937473; Name=CK937473; organism=Citrus sinensis; type=EST; length=738bp
GCGGGGATAGCCATTATCATCAAAATANNNACACTAAATATTAGTCAAAA
TGCTTCACATTCTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAAT
GCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCC
CGCCGGCTATCCTTGCGTGCCCCCCGCTATGGTTACCGCTGACGACTTCG
TATTTTCGGGCCTCGGCGTGGCCGGAAACACCACGAGCATTATCAACGCG
GCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGGCTCGG
ACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCC
ACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCGTA
ACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCT
TAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAG
TAAATTCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCG
AATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTC
TTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGA
GGCTCAAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACAT
TCTTCATTNNNAGTTNNNAGTTCTTAATTTCATTTAGT
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