CX675319

Overview
NameCX675319
Unique NameCX675319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_RHIME (30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.280e-20
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = -2
Query:   77 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEA 463
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W++ GAQP+D V R L +AGL   P       +  P   +P      R  E    A++  A   E  A
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIAQGAQPTDRVMRFLDQAGLAKRP------ARNNPTKAQPGKKAQERAAEAKQKAEEAAAAASEAAA 123          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = -2
Query:  218 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 463
            M V IRLAR G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ DR K+WLSVGAQP+D V R L  AG+
Sbjct:    1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFLDAAGV 82          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = -2
Query:   71 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEAAP 463
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ +RV+YWL  GA+P+D V R+L  A +LP         +  P+   P      R  EK   AK  +A     + AP
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARMLEAAEVLPKT------ERNNPKKAVPGKKAQDRAEEKA--AKAAEASEAPADEAP 123          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = -2
Query:  218 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 463
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ +RV+YWL  GAQP+D V R+L  AGL
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARMLEAAGL 82          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_AGRVS (30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -2
Query:   98 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKA 463
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D  KR+ LN DR+K W++ GAQP+D V + L  AGL           +  P   +P      R+ EK   A  + A
Sbjct:    1 MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIKEWIAKGAQPTDRVLKFLAEAGL------AERAARSNPEKAKPGKRAVERLAEKKQKADALAA 116          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_SINMW (30S ribosomal protein S16 OS=Sinorhizobium medicae (strain WSM419) GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = -2
Query:   77 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEA 463
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W+  GAQP+D V R L +AGL   P       +  P    P      R  E    A++  A   E  A
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIDQGAQPTDRVLRFLDQAGLAKRP------ARSNPVKALPGKKAQERAAEAKQKAEEAAAAASEAAA 123          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = -2
Query:  113 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNA 463
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ +RV+YWLS GAQ +D V R+L  AG      +V    +  P    P      R  EK   A
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARMLEAAG------VVGKTERSNPNKAVPGKKAKERAEEKAAKA 111          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = -2
Query:  218 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 463
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWLS GAQP+D V R L  AGL
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFLEAAGL 82          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_RHOCS (30S ribosomal protein S16 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  170 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPR 463
            M V+IRL+R G K +PFY ++ A+SR+PRDG  +E +G YNP+   D  +R+ L  DR+K WL+ GAQP+D V R L +A L+P P +    +K  P+
Sbjct:    1 MSVKIRLSRGGAKKRPFYSIVVANSRAPRDGDFIEKVGTYNPMVPHDHPERVVLQEDRIKEWLAKGAQPTDRVARFLGKANLIPMPALRETPKKSAPK 98          
BLAST of CX675319 vs. ExPASy Swiss-Prot
Match: RS16_MAGSA (30S ribosomal protein S16 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  170 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPR 463
            M ++IRL+R G K +PFY+++ AD+R+PRDG+ +E +G YNP+   D G+R  L+ DRVK+WLSVGAQP+D + R     GL+  P      ++  P+
Sbjct:    1 MALKIRLSRGGAKKRPFYKIVVADARAPRDGRFIEKVGTYNPMLPNDNGQRWILDEDRVKHWLSVGAQPTDRLVRFFADKGLVAKPVRAEQTKQPQPK 98          
The following BLAST results are available for this feature:
BLAST of CX675319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RHIME5.280e-2040.3130S ribosomal protein S16 OS=Rhizobium meliloti GN... [more]
RS16_SPHWW1.176e-1957.3230S ribosomal protein S16 OS=Sphingomonas wittichi... [more]
RS16_DINSH1.176e-1941.9830S ribosomal protein S16 OS=Dinoroseobacter shiba... [more]
RS16_ROSDO1.536e-1956.1030S ribosomal protein S16 OS=Roseobacter denitrifi... [more]
RS16_AGRVS2.006e-1940.9830S ribosomal protein S16 OS=Agrobacterium vitis (... [more]
RS16_SINMW4.470e-1940.3130S ribosomal protein S16 OS=Sinorhizobium medicae... [more]
RS16_SILPO4.470e-1944.4430S ribosomal protein S16 OS=Silicibacter pomeroyi... [more]
RS16_RHOS55.838e-1956.1030S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_RHOCS7.625e-1945.9230S ribosomal protein S16 OS=Rhodospirillum centen... [more]
RS16_MAGSA7.625e-1944.9030S ribosomal protein S16 OS=Magnetospirillum magn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61D12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675319 ID=CX675319; Name=CX675319; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGGAAAAACAACTATTTTTTTATTGCAAAATAAG
GCAGTGTTTAAAACATTTCAAGGGGCAGCCTCTCCTTCCATACCATCAGC
TTTTATTTGCTTAGCATTGGTTGGCTTCTCCAAAACACGTCCTGTCATAG
GATCGACCGGACGTGTATCACGTGGTCCACCTTTGCGTCCCATTGCCACC
ATAGGAGGTGGGGGTAGTAACCCTGCCCTGAAAAGAATGCGCTGGACAGG
GTCTGATGGTTGGGCACCAACTGATAGCCAATACTTCACTCTATCAAAAT
TCAGACCCATTCTTTTGCCGCAGTCTTGACCTGGCAAGGGATTGTAATAG
CCCAAGACTTCAAGATGCTTGCCATCTCTGGGTGATCGGCTATCAGCAGC
CATCACCCGATAGAAAGGTTTGTTCTTACATCCGAATCTCGCCAATCGGA
TCCTCACCACCATCTTTTCTTTTCCTGGATACCCTCTGCTCTTTTTTTGC
TGAGGCTGGTTCGCTGAGGTTGTTGTCGTGGACTCGTGGGCTGCTGCCGT
GAGCTGCGGTCGTGGGTTTCTGTAGTCGATTGAGGCTGCTTTGGTACGGT
TGTTGTGGACTGACGCTGATTTGAGAGAGGAGAGATGAGGCTGACGTGTG
GTGAGGCCGTCGGCAGAACTGCGACTGTTTTGGGCTGAGGCTCAGAGGCT
GTCGGCGGCTCGTGCCTGTCGTGGTGACGCGTGAGGCTATCAGCGGCTAT
AACGTGGCGCAGCTGTGTCGTGGCGT
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