CX675313

Overview
NameCX675313
Unique NameCX675313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10218 contig Csv1_Contig10218:102..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.449e-67
Identity = 123/145 (84.83%), Postives = 132/145 (91.03%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL 435
            GH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+GSYSYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLERYGELDLFQPVMGEE P SVP LISRL
Sbjct:  346 GHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDLFQPVMGEEGPASVPLLISRL 490          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.633e-60
Identity = 116/144 (80.56%), Postives = 126/144 (87.50%), Query Frame = 1
Query:    4 HCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL 435
            H VLVYMPAGQLARDIEK SDEAAANFAF+QL+KILPDASSPI YLVS WG+D NSLGSYSYD V K HDLYERLR+P+DNLFFAGEATS SYPGSVHGA+STG++AAEDCRMRVLERYGEL   +  M EE P SVP LISR+
Sbjct:  348 HPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERYGEL---EHEMEEEAPASVPLLISRM 488          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 79/150 (52.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPV--MGEETPI---SVPFLISRL 435
            GH VLVYM AG LA+D+EK+SDEA ANF   QLKK+ PDA  P QYLV+ WGTD N+LG Y+YD VG   DLY RL  PVDN+FF GEA ++ + GS HGAF  G+ A+++C+  + ER G  +  + V  MG    +   +VP  ISR+
Sbjct:  348 GHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFERLGAWEKLKLVSLMGNSDILETATVPLQISRM 497          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELD 372
            G  +L+ + AG+ A + EK S           L+KI      +   P+Q + + WGTD  + GSYSY  +G S D Y+ L   V D +FFAGEAT+  YP ++HGA  +G   A +       R  ++D
Sbjct:  596 GGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIVRAARRRAKKVD 724          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 357
            G  +L+ + AG+ A + E      A +     L+ I      +   P+Q + + WGTD+ SLGSYS+  VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF +GL  A +  +    R
Sbjct:  516 GGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 357
            G  +L+ + AG+ A + E      A +     L+ I      +   P+Q + + WGTD+ SLGSYS+  VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF +GL  A +  +    R
Sbjct:  516 GGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LDL1_ARATH (Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 51/137 (37.23%), Postives = 68/137 (49.64%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQP 384
            G  +LV + AG  A   E +S   +       L+ I       +PD   P+Q L S WG D  S GSYSY  VG S D Y+ L   V +  +FFAGEAT+  YP ++HGAF +G+  A +  +RV  R        P
Sbjct:  586 GGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVVPD---PVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANI-LRVARRRASSSALNP 718          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAA 327
            G  +L+ + AG+ A   E M    A       L+ I      +   P+Q + + WG D  SLGSYS   VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF TGL  A
Sbjct:  502 GGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREA 616          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 327
            G  VL+ + AG+ A + EK+    A +     LK I       +PD   PIQ   + WG+D    GSYS+  VG S   Y+ L   V D LFFAGEAT+ +YP ++HGA  +GL  A
Sbjct:  479 GGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPD---PIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREA 592          
BLAST of CX675313 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   10 VLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-----------DNLFFAGEATSMSYPGSVHGAFSTGLMAA 327
            VL+ + AG  A  +E ++D+       + LK I  + S   P + +V+ W +D  + GSYSY +VG S   Y+ L  PV             LFFAGE T  +YP +VHGA+ +GL  A
Sbjct:  703 VLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREA 821          
The following BLAST results are available for this feature:
BLAST of CX675313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PAO2_ARATH8.449e-6784.83Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH2.633e-6080.56Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO4_ARATH1.406e-3752.67Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
LDL1_ORYSJ1.198e-1234.88Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LDL3_ORYSJ2.044e-1236.80Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL3_ORYSI2.044e-1236.80Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL1_ARATH3.486e-1237.23Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LDL3_ARATH7.767e-1240.00Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL2_ORYSJ1.014e-1140.17Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LSDA_DROME6.575e-1136.13Possible lysine-specific histone demethylase 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61D07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D07-H13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675313 ID=CX675313; Name=CX675313; organism=Citrus sinensis; type=EST; length=705bp
GGTCACTGTGTCCTTGTTTACATGCCTGCCGGGCAGTTGGCTAGAGACAT
TGAGAAAATGTCCGATGAAGCTGCTGCTAATTTTGCTTTTACGCAACTCA
AGAAGATCCTTCCTGATGCATCTTCCCCGATCCAATATCTTGTTTCTCAT
TGGGGCACAGATGCCAACTCGCTTGGGTCCTACAGCTACGATACAGTAGG
CAAATCCCATGATCTGTATGAAAGGCTAAGGATACCAGTGGACAACCTAT
TCTTTGCCGGTGAGGCAACAAGCATGAGCTACCCAGGGTCGGTTCATGGT
GCATTCTCGACTGGACTGATGGCTGCCGAGGACTGCCGGATGCGTGTTCT
GGAGCGTTATGGGGAATTGGACTTATTCCAGCCAGTAATGGGTGAGGAAA
CCCCGATTTCTGTCCCATTTTTGATCTCCCGTCTGTAACTTAAAAAGAGG
GCTGTCAGTTATACTAGAAAGTAATGGTAGTATATTGGTGTAGATTTATG
TAAACACTGGGACTGATCTAGCTAACACATTGCTGCCCATTTGACTACTG
GCTGTGAGGGGAATGTTGTGAAAAACAACCATTTTCCCATTGACCAATCA
GTTGAATAATTGGCAAATGTGTATAAATTGCCATGTGTGGCATGTACCTA
TAGCATTTTGAACTTGGAACAAAATTTATGTAATAACAAAAATTTCGAAA
AAAAA
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