CK937413

Overview
NameCK937413
Unique NameCK937413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937413 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.365e-49
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 3 
Query:  210 FLAGNTKQEVCDFKVKGSWTERSCVVYAGESNTIVAQMHKKETVGSYFLNKDRFAVTVYPNIDYAFIVALIVILDDINGDN 452
            FL  N  ++ CDF+VKGSW ERSCVVYAGES+ IVAQMH+K TV S FL KD F+VTVYPN+DYAFI +L+VILDD+N ++
Sbjct:  134 FLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214

HSP 2 Score: 93.5893 bits (231), Expect = 4.365e-49
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:    2 FKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFFG 217
            FKVKE  F LHDKR LLD +G PVVT+ EK+ S H++  VFRG STD +DLL+TV  SS+LQLKT L+VF G
Sbjct:   65 FKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG 136
The following BLAST results are available for this feature:
BLAST of CK937413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH4.365e-4967.90UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004510_B05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937413 ID=CK937413; Name=CK937413; organism=Citrus sinensis; type=EST; length=478bp
GTTCAAAGTCAAAGAGAAACATTTTAGCCTCCATGACAAGCGGACTCTAC
TCGATCCTGCCGGCAATCCTGTGGTCACCATAACAGAGAAATTGTTTTCT
GCGCACGAGAAGCATTCTGTATTCAGGGGAGCAAGCACAGATGCCAAAGA
TCTTCTCTTTACTGTGGGAGCATCTTCAGTGCTCCAATTGAAGACCACTT
TGAATGTTTTTTTTGGCAGGTAATACCAAACAAGAGGTTTGTGATTTTAA
GGTCAAAGGCAGCTGGACAGAACGATCCTGTGTTGTTTATGCAGGAGAGT
CCAACACAATTGTTGCCCAGATGCACAAAAAGGAAACCGTTGGAAGCTAC
TTCCTTAACAAGGATAGATTCGCCGTGACAGTTTATCCCAACATCGACTA
TGCATTTATAGTTGCCCTGATTGTGATCCTTGATGACATCAACGGTGACA
ACACTGNNNGNNATTACTCATATTTCAG
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