CK937408

Overview
NameCK937408
Unique NameCK937408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.601e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_JASNU (Photosystem II reaction center protein K OS=Jasminum nudiflorum GN=psbK PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSL+ ICLNSALYSSSF F KLPEAYAFLNPIVDVMPVIPV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLISICLNSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_VITVI (Photosystem II reaction center protein K OS=Vitis vinifera GN=psbK PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSL+ ICLNSALYSS+F FAKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSNFFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSL+ ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSVLYSSSFFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+F+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+F+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_COFAR (Photosystem II reaction center protein K OS=Coffea arabica GN=psbK PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSL++ICLNSALYSS F F KLPEAYAFLNPI+D MPVIPV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLIWICLNSALYSSGFFFGKLPEAYAFLNPIIDFMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_PHAAO (Photosystem II reaction center protein K OS=Phalaenopsis aphrodite subsp. formosana GN=psbK PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+F L+ ICLNS LYSSSF FAKLPEAYAF NPI+DVMP+IPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFCLICICLNSTLYSSSFFFAKLPEAYAFFNPIIDVMPIIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSL+ ICLNSALYSSS  FAKLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_LIRTU (Photosystem II reaction center protein K OS=Liriodendron tulipifera GN=psbK PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.278e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 2
Query:   77 MLNMFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MLN+FSL+ IC+NSAL+SSSF FAKLPEAYAF NPIVDVMPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICINSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of CK937408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PSBK_CITSI2.601e-2798.36Photosystem II reaction center protein K OS=Citrus... [more]
PSBK_JASNU2.061e-2490.16Photosystem II reaction center protein K OS=Jasmin... [more]
PSBK_VITVI3.515e-2488.52Photosystem II reaction center protein K OS=Vitis ... [more]
PSBK_MORIN4.590e-2490.16Photosystem II reaction center protein K OS=Morus ... [more]
PSBK_GOSHI5.995e-2488.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_GOSBA5.995e-2488.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_COFAR1.023e-2385.25Photosystem II reaction center protein K OS=Coffea... [more]
PSBK_PHAAO1.336e-2385.25Photosystem II reaction center protein K OS=Phalae... [more]
PSBK_PANGI1.744e-2386.89Photosystem II reaction center protein K OS=Panax ... [more]
PSBK_LIRTU2.278e-2386.89Photosystem II reaction center protein K OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004510_A12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937408 ID=CK937408; Name=CK937408; organism=Citrus sinensis; type=EST; length=666bp
TCATTTTTATCTTATATCAATAAGATATTAGTAACTCAATCAAAATAAAA
TTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATGTTTAGTTTAATG
TATATCTGTCTCAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCGCTAA
ATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAG
TAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTA
AGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTTATT
CTAGTTCGAAAAAAAAAAAATTCTAACAATTAATAAATAAGAGCAGATGA
GTCTTACAATATGAACGAACCCCCGCCTCAATTCAAACATTCAAACAATG
AAATTCTTGGGGAACCGCGATCCATTTTGATCCCCCATTTGCTATTTGCA
ATTTTGACCCTTTTTCACTGAAACCATCTTATATTAGAGCCAACCAAAAT
GTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTA
GAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATA
TGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAAA
AAAAAAAAAAAAAAAA
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