EY665876

Overview
NameEY665876
Unique NameEY665876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.373e-110
Identity = 202/244 (82.79%), Postives = 212/244 (86.89%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADD IVKLVDTFPGQSIDFFGALRARVY DEVRKW+S VGV++IGK LVNSKE  P+  +  MT++ LL Y  +   E +N +   L     S A
Sbjct:  177 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEA 420          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 2.343e-110
Identity = 200/244 (81.97%), Postives = 212/244 (86.89%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ IVK+VD FPGQSIDFFGALRARVYDDEVRKW+S VGV++IGK LVNSKE  PT  +  MT++ LLQY  +   E +N +   L     S A
Sbjct:  177 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEA 420          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 1.519e-109
Identity = 200/244 (81.97%), Postives = 213/244 (87.30%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA + IVKLVDTFPGQSIDFFGALRARVYDDEVRKWI+GVGV+SIGK LVNSKE  PT  +  MT+E LL+Y  +   E +N +   L     S A
Sbjct:  177 LVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 9.843e-109
Identity = 195/244 (79.92%), Postives = 211/244 (86.48%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+ IVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S  GVE+IGK LVNS+E  P   +  MT+E L++Y  +   E +N +   L     S A
Sbjct:  168 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEA 411          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 3.740e-108
Identity = 194/230 (84.35%), Postives = 205/230 (89.13%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  + IVKLVDTFPGQSIDFFGALRARVYDDEVRKW  GVGVE IG++LVNSKE  PT  +  MT+E LL+Y  +   E +N
Sbjct:  174 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQEN 403          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 385.571 bits (989), Expect = 2.052e-106
Identity = 190/230 (82.61%), Postives = 204/230 (88.70%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++ I KLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGV++ GK LVNSKE  PT  +  M+++ LLQY  +   E +N
Sbjct:  179 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQEN 408          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 2.680e-106
Identity = 190/244 (77.87%), Postives = 208/244 (85.25%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+   G+E+IGK LVNS++   T  +  MT+E LL+Y  +   E  N +   L     S A
Sbjct:  167 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQA 410          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.501e-106
Identity = 194/244 (79.51%), Postives = 208/244 (85.25%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAKM INPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+  +GVE+I K LVNS+E  PT  +  MT+E L++Y  +   E +N +   L     S A
Sbjct:  165 LVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEA 407          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 5.971e-106
Identity = 186/230 (80.87%), Postives = 205/230 (89.13%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVF KM INPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW+SG G+E IG+ L+NS++  PT  +  MT+E LL+Y  +   E +N
Sbjct:  176 LVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQEN 405          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 384.03 bits (985), Expect = 5.971e-106
Identity = 188/230 (81.74%), Postives = 205/230 (89.13%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVFAKM I PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++H+V+LVDTFPGQSIDFFGALRARVYDDEVR+W+S  GVE+I + LVNSKE  PT  +  +T+E LL+Y  +   E +N
Sbjct:  173 LVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQEN 402          
The following BLAST results are available for this feature:
BLAST of EY665876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA1_LARTR1.373e-11082.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.343e-11081.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.519e-10981.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ9.843e-10979.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA3.740e-10884.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.052e-10682.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.680e-10677.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.501e-10679.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN5.971e-10680.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE5.971e-10681.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665876 ID=EY665876; Name=EY665876; organism=Citrus sinensis; type=EST; length=885bp
CCCGCGTCCGCTTGTTTTCGCCAAGATGCCCATCAACCCAATTATGATGA
GTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACCCGCTAAGTTGATC
AGGCAGAGGTACCGTGAGGCAGCTGACATTATCAAGAAGGGAAAAATGTG
CTGCCTCATGATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGCA
CCACCCAGTACACAGTTAACAACCAAATGGTTAACGCCACACTCATGAAC
ATTGCTGATAACCCAACTTGTGTCCAACTCCCTGGTATGTACAACAAGGA
GGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAATGACTTCTCAACAT
TGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCA
CCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGA
CAATGTGGCTGATGACCACATTGTCAAGCTTGTCGACACCTTCCCCGGCC
AATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAG
GTGAGGAAGTGGATCTCTGGGGTTGGTGTGGAAAGCATTGGAAAGAGCCT
TGTGAACTCAAAGGAACAAACCCCCACATTGAGCAAACAAGGGATGACAA
TGGAAAATTTGCTCCAATACCGGAAACTTGATGGGCCAGAACCAAAAAAT
GGGCAAACAAGTTCACTTGGCTCCAACAATTATTCTGGCGCAGGGCCCCC
CTTTGCTGAACCTCCATGCTCCAAACACTCTCCCCCACCCGCCCACTTTC
AATGCGTCACTTCCTCCTACAATCCACACCTAAAAAGGCACAATTTGAGG
GTCGATTTTCATACCCACACAATGACCCGCCCCCC
back to top