CX675307

Overview
NameCX675307
Unique NameCX675307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675307 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.321e-32
Identity = 77/179 (43.02%), Postives = 97/179 (54.19%), Query Frame = -2
Query:  413 AHAVHPITAVQLEWSLWTRDIENEIVPLXRELGIGIVPYSPLGRGFF-GGKAVVESVPPDSFLVCFSSMFVRIVLFHNTV*HRCF*ETT*AFQFHLRLMFHMW*SLLKFCMYLFYKNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNI 946
            AHAVHPITAVQLEWSLW+RD+E EI+P  RELGIGIV YSPLGRGF   G  ++E +  + +                                                     + +LPRF  ENL+ N+++Y RI  +A +  CT +QLALAWV  QG+DV PIPGTTKI+NL  N+
Sbjct:  176 AHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSSGPKLLEDMSNEDY-----------------------------------------------------RKYLPRFQAENLENNKNLYERICEMAVRKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNM 301          
BLAST of CX675307 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.015e-19
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = -2
Query:  278 YKNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIGSLTVKLTNEDLKEISDAVPTEEVAGGRYPDSFDKTSWNFANTPP 607
            ++   PR+  EN  +N  +  +IE +A     T  QL+LAW+L QGDD++PIPGT ++K LE+N G+L VKL++  +KEI +A    EV G RYP      S  F +TPP
Sbjct:  230 FRRKAPRYQKENFYKNLELVTKIEKIATANNITPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPG--AGSKIFMDTPP 337          
BLAST of CX675307 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.974e-17
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  764 AHAVHPITAVQLEWSLWTRDIENEIVPLXRELGIGIVPYSPLGRGFF-GGKAVVESVPPDSF 946
            AHAVHPITAVQLEWSLW+RD E +I+P  RELGIGIV YSPLGRGFF  G  +V+S+    F
Sbjct:  171 AHAVHPITAVQLEWSLWSRDAEEDIIPTCRELGIGIVAYSPLGRGFFSSGAKLVDSLSEQDF 232          
The following BLAST results are available for this feature:
BLAST of CX675307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
A115_TOBAC6.321e-3243.02Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YAKC_SCHPO8.015e-1943.64Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
IN22_MAIZE1.974e-1769.35IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D04-H7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675307 ID=CX675307; Name=CX675307; organism=Citrus sinensis; type=EST; length=947bp
TGATTTCAGGTTGTACCTTAAAAAGCCTCACACATATTCTCACTTCACAA
ATCCGGCACACCATGTTTACAAATATATAGTACATCATAATGATCAAAGT
TTTACTCATGAAATTGTTTAGCACGAAGTAATGTACCGGTATCTTGTAAA
CATGTTCTGACATTTATCTGAGTTTATTTGCGTAAAATACGACATCCCAA
GCTCCCAACCCCAAGTGATGATATAGGCAGCATCCGGCAAATATTTTAAG
CTCAAAGTTCAAACCTTAAGAGTCTTTTGGAGGTGTGTTTGCAAAATTCC
ACGATGTTTTGTCAAAGGAATCTGGATATCTTCCTCCTGCAACCTCTTCT
GTGGGTACGGCATCAGAAATTTCTTTCAGATCCTCGTTTGTAAGTTTTAC
TGTCAAGGAGCCAATATTGTCTTCTAGGTTCTTAATCTTAGTTGTCCCAG
GAATAGGTACGACATCATCCCCCTGTTCGAGAACCCATGCCAGTGCTAAT
TGCGCAGAAGTGCATTTGTACTTTTTGGCAAGGTTCTCTATGCGAAAATA
AATACTCCTGTTTCTGTCCAGGTTCTCTCCGGTGAACCGAGGAAGAAAAT
TCTTATAAAACAGATACATGCAGAATTTTAATAAGCTTCACCACATATGG
AACATTAGTCTCAAATGAAACTGGAAAGCTCATGTTGTTTCTTAAAAACA
TCTATGTTATACTGTGTTATGAAACAAAACGATGCGGACAAACATTGATG
AAAAACATACCAAAAAGCTATCTGGAGGCACACTTTCCACAACAGCTTTG
CCACCGAAAAATCCACGACCAAGAGGACTGTATGGAACTATTCCAATGCC
AAGCTCCCTGNCAAGTGGTACTATCTCATTCTCAATGTCACGAGTCCAAA
GAGACCATTCCAGTTGTACAGCTGTGATAGGATGAACAGCATGTGCT
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