CX675303

Overview
NameCX675303
Unique NameCX675303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675303_ssr362 microsatellite CX675303_ssr362:362..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.253e-42
Identity = 86/141 (60.99%), Postives = 111/141 (78.72%), Query Frame = -3
Query:  489 SIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAY--NALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARF---GAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCG 896
            SI+SYD+ H   ++  R++ EVM+++EAWLVKHGKA   N+L EK++RFEIFK+NLRF+DEHN +N +Y++GL RFADLTN+EYRS +LGA+    G +RTSL      RY  RVG+ LP+S+DWRKKGAVAEVKDQG CG
Sbjct:   25 SIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSL------RYEARVGDELPESIDWRKKGAVAEVKDQGGCG 159          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.603e-40
Identity = 79/127 (62.20%), Postives = 102/127 (80.31%), Query Frame = -3
Query:  489 SKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCG 866
            +K+ + RT+DEV AM+E+WL+K+GK+YN+LGE E+RFEIFKE LRFIDEHN++ NR+YKVGLN+FADLT+EE+RS +LG   G+ +T    K SNRY PRVG+ LP  VDWR  GAV ++K QG CG
Sbjct:   27 AKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKT----KVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECG 149          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 6.437e-39
Identity = 78/127 (61.42%), Postives = 101/127 (79.53%), Query Frame = -3
Query:  489 SKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCG 866
            +K+ + RT+DEV AM+E+WL+K+GK+YN+LGE E+RFEIFKE LRFIDEHN++ NR+YKVGLN+FADLT+EE+RS +L    G+ +T    K SNRY PRVG+ LP  VDWR  GAV ++K QG CG
Sbjct:   27 AKNLTQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLRFTSGSNKT----KVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECG 149          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.041e-33
Identity = 68/121 (56.20%), Postives = 92/121 (76.03%), Query Frame = -3
Query:  489 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCG 848
            R + EV  M+E WLV++ K YN LGEKE+RF+IFK+NL+F+DEHNS  +RT++VGL RFADLTNEE+R+++L  +    + S+K++   RYL + G+ LPD VDWR  GAV  VKDQG+CG
Sbjct:   35 RNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNEEFRAIYLRKKMERTKDSVKTE---RYLYKEGDVLPDEVDWRANGAVVSVKDQGNCG 152          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.536e-32
Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = -3
Query:  489 SIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCG 896
            SIVSY +         R+++E   ++  W  +HGK+YNA+GE+E+R+  F++NLR+IDEHN+       ++++GLNRFADLTNEEYR  +LG R   +R   + K S+RYL    EALP+SVDWR KGAVAE+KDQG CG
Sbjct:   24 SIVSYGE---------RSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRR---ERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCG 151          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.133e-30
Identity = 65/129 (50.39%), Postives = 91/129 (70.54%), Query Frame = -3
Query:  489 WRTDDEVMAMFEAWLVKHGKAYN----ALGEKEKRFEIFKENLRFIDEHNSENR--TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSN-RYLPRV-GEALPDSVDWRKKGAVAEVKDQGSCG 851
            WRTD+EV +++  W  +HGK  N     + +++KRF IFK+NLRFID HN +N+  TYK+GL +F DLTN+EYR ++LGAR    R   K+K  N +Y   V G+ +P++VDWR+KGAV  +KDQG+CG
Sbjct:   39 WRTDEEVRSIYLQWSAEHGKTNNNNNGIINDQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCG 167          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.711e-29
Identity = 67/139 (48.20%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  492 SIVSYDKTHESKSSSWRT----DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSC 896
            S+VS +  H   +   R     D E   MFE+W+VKHGK Y+++ EKE+R  IF++NLRFI   N+EN +Y++GLNRFADL+  EY  +  GA     R  +    SNRY    G+ LP SVDWR +GAV EVKDQG C
Sbjct:   27 SVVSSNDNHHVTAGPGRRQGIFDAEATLMFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLC 165          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.623e-29
Identity = 64/126 (50.79%), Postives = 91/126 (72.22%), Query Frame = -3
Query:  489 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVA-EVKDQGSCG 860
            + S R + EV+ M+E WLV++GK YN LGEKE+RF+IFK+NL+ I+EHNS+ NR+Y+ GLN+F+DLT +E+++ +LG +   K     S  + RY  + G+ LPD VDWR++GAV   VK QG CG
Sbjct:   28 TESQRNEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSL---SDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECG 150          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = -3
Query:  492 SIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSC 896
            S+VSYD  +   S     D E   +FE+W+VKHGK Y ++ EKE+R  IF++NLRFI+  N+EN +Y++GL  FADL+  EY+ +  GA     R  +    S+RY     + LP SVDWR +GAV EVKDQG C
Sbjct:   27 SVVSYDDNNRLHSVF---DAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSSDRYKTSADDVLPKSVDWRNEGAVTEVKDQGHC 158          
BLAST of CX675303 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.148e-26
Identity = 63/136 (46.32%), Postives = 87/136 (63.97%), Query Frame = -3
Query:  489 SIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCG 896
            SIV Y   H + +      D+++ +FE+W+ +H KAY ++ EK  RFE+F+ENL  ID+ N+E  +Y +GLN FADLT+EE++  +LG      + S K + S  +  R    LP SVDWRKKGAVA VKDQG CG
Sbjct:   32 SIVGYTPEHLTNT------DKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLG--LAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCG 159          
The following BLAST results are available for this feature:
BLAST of CX675303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RD21A_ARATH1.253e-4260.99Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ACTN_ACTDE7.603e-4062.20Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ACTN_ACTCH6.437e-3961.42Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPR1_ARATH4.041e-3356.20Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
ORYA_ORYSJ1.536e-3250.71Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH7.133e-3050.39Germination-specific cysteine protease 1 OS=Arabid... [more]
CPR4_ARATH2.711e-2948.20Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPR2_ARATH4.623e-2950.79Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CPR3_ARATH1.139e-2746.67Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
XCP1_ARATH2.148e-2646.32Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61D02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D02-H3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675303 ID=CX675303; Name=CX675303; organism=Citrus sinensis; type=EST; length=898bp
CCTTCCGTCAGAAGATATCTTCTTGTTTTTCACACTTCCTAATTTCTTGT
CAGTTTTTCTCTTTATTGTTTTTCGACAAAACAATAAAAAAGGAATACTC
AATTTGGACCATTGATTATCACAGTGGCCCAAGCCTCCGAACTCTCGCCA
AAAGTCCGAGAACGAAACAGCACTTTAAAAAAATAATCATAATAATAGTG
TCGGAGAAAAAAAGAAATTCACGAAAACCAGATTCTAATTGATGGAAAAG
ATTAAAAAATAACAGTAATAGTCCTAACCGGTCAACTTAGCACAACTGCC
CCCAACCGGAAGCAGTGCAAGATTCTTCTAACTCTAATCATCCTTAAAAT
ACCAAACATACCCTTTCCTTTCCTTTCCTTTCCTCTCCGCAATCGATTCA
TTCATAATTTTAAGATAATAATTAAAGTACTGCAGGTAACGAATAAAATC
TAAAAAAGAAAAAGTAAATGAAAACAATAAAAAAACTGACCACAGCTTCC
TTGATCTTTAACTTCAGCGACAGCTCCTTTCTTCCTCCAATCAACAGAGT
CCGGCAACGCCTCGCCGACACGTGGCAGATAACGGTTGCTCCTCTTTGAT
TTCAAGGAAGTCCTTTTAGCACCAAAGCGTGCACCCAGATGCATGGACCG
GTACTCCTCGTTGGTCAAATCAGCAAACCGGTTCAACCCAACCTTGTAGG
TCCGGTTCTCTGAGTTATGTTCATCAATAAACCTAAGATTTTCCTTAAAG
ATCTCAAACCTCTTCTCTTTTTCACCCAAAGCGTTATAAGCCTTGCCATG
CTTCACGAGCCAGGCCTCGAACATAGCCATAACCTCATCGTCGGTCCTCC
AGCTGCTAGATTTTGACTCATGGGTTTTATCATAAGATACAATCGACA
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