CX675298

Overview
NameCX675298
Unique NameCX675298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:264..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.374e-60
Identity = 101/124 (81.45%), Postives = 114/124 (91.94%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 374
            CMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:   57 CMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.050e-56
Identity = 95/123 (77.24%), Postives = 108/123 (87.80%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   60 CMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.902e-56
Identity = 95/123 (77.24%), Postives = 108/123 (87.80%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   60 CMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.141e-54
Identity = 94/122 (77.05%), Postives = 105/122 (86.07%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 368
            CM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   55 CMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.542e-54
Identity = 92/123 (74.80%), Postives = 107/123 (86.99%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   58 CMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.320e-54
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 374
            CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:   59 CMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.320e-54
Identity = 94/123 (76.42%), Postives = 105/123 (85.37%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   57 CMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.663e-54
Identity = 93/122 (76.23%), Postives = 106/122 (86.89%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 368
            CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:   55 CMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.663e-54
Identity = 92/123 (74.80%), Postives = 104/123 (84.55%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWPP G KKFETLSYLPPLSD  LL ++ YLL +GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:   57 CMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.663e-54
Identity = 93/123 (75.61%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   57 CMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of CX675298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_LACSA2.374e-6081.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY6.050e-5677.24Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP7.902e-5677.24Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA1.141e-5477.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.542e-5474.80Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_BETVE3.320e-5476.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL3.320e-5476.42Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_RAPSA5.663e-5476.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP5.663e-5474.80Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_SOLLC5.663e-5475.61Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61C09-F17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675298 ID=CX675298; Name=CX675298; organism=Citrus sinensis; type=EST; length=673bp
AATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTC
TCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTA
CCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAG
GATGGGTGTACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGC
TACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCA
GGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCG
TCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTC
CTTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAAC
CACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATC
ATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTG
TTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTT
TTTTATATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATC
TGGGTCTCGGATGTTCAGTTTAATGAGTGAGAATTACTGGAATTAAAAGA
GTAGTTTTATGATTCTTGCAAAA
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