CK937346

Overview
NameCK937346
Unique NameCK937346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.517e-90
Identity = 162/178 (91.01%), Postives = 173/178 (97.19%), Query Frame = 1
Query:   82 MVHVSFYRNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            MV+V FYRNYGKTFKKPRRPY KERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RY  L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGRPGRVKRRN
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.962e-87
Identity = 158/178 (88.76%), Postives = 172/178 (96.63%), Query Frame = 1
Query:   82 MVHVSFYRNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            MVHV +YRNYGKTFK PRRPY KERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RY  L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGRPGRVKRRN
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.322e-67
Identity = 125/170 (73.53%), Postives = 150/170 (88.24%), Query Frame = 1
Query:  103 RNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 612
            R+Y KT K PRRP+   RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R   L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGRPGRV+R+
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 8.571e-67
Identity = 123/170 (72.35%), Postives = 149/170 (87.65%), Query Frame = 1
Query:  109 YGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 618
            + KT+  PRRPY K RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R   L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGRPGRVKR+N+
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 250.366 bits (638), Expect = 9.476e-66
Identity = 120/167 (71.86%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            KT+  PRRP+ K RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R   L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.476e-66
Identity = 120/167 (71.86%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            KT+  PRRP+ K RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R   L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 9.476e-66
Identity = 120/167 (71.86%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            KT+  PRRP+ K RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R   L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 9.476e-66
Identity = 120/167 (71.86%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            KT+  PRRP+ K RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R   L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.476e-66
Identity = 120/167 (71.86%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            KT+  PRRP+ K RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R   L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.368e-64
Identity = 118/172 (68.60%), Postives = 146/172 (84.88%), Query Frame = 1
Query:  103 RNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 618
            R   KT+K PRRP+   RLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R   L+ES+ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177          
The following BLAST results are available for this feature:
BLAST of CK937346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS92_ARATH5.517e-9091.0140S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH1.962e-8788.7640S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN1.322e-6773.5340S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME8.571e-6772.3540S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT9.476e-6671.8640S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN9.476e-6671.8640S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE9.476e-6671.8640S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN9.476e-6671.8640S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN9.476e-6671.8640S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO1.368e-6468.6040S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937346 ID=CK937346; Name=CK937346; organism=Citrus sinensis; type=EST; length=834bp
GGGGACGCCATTTGCTTANNNNNTTACAAAGATCGCAGAGAGAGAGAGAG
AGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGTTTCATTCT
ACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGGGAAG
GAGCGATTGGATGCTGAGTTGAGGCTTGTGGGAGAGTATGGGCTTCGCTG
CAAGAGGGAACTCTGGAGGGTTCAATATGCATTGAGCCGCATCCGAAATG
CTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTC
GAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTACCGCTTCTTGGAAGA
GAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTC
TTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCA
ATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAG
GCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGC
ACATTGAATTCTCACTCACAAGTCCATTCGGAGGTGGGCGCCCTGGAAGA
GTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGA
TGGGGATGAAGAGAATGAAGAATAAATTACCTGTGTGAACAGATAGTTTT
TTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCT
TCTCTAAGTTTTATGTTTTTATTTGCGAATTTTCTTGCTATAATAGGAGG
TTTTGCTTGCTTTGTGTTTTACAGACTACTCATT
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