CK937340

Overview
NameCK937340
Unique NameCK937340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.029e-38
Identity = 71/123 (57.72%), Postives = 92/123 (74.80%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            ++LV+ +P+  VA+ L S+FYT ++LFAGF++P+ QIPKWWIW YYL+PTSWTL G LTSQYGDI+KEI VF E KT+A+FL +YFGFHH+                 SLFAFF+G+LNFQ+R
Sbjct: 1325 MMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.466e-35
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            +LLV  +PNV +A TL S+FY   +LFAG+V+P+P IP+WWIW+YYLSPTSW L G LTSQYGD++KEI+ F E K +++FLE+YFG+ +D                 SLFAFF+G+LNFQ++
Sbjct: 1268 MLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.914e-35
Identity = 66/123 (53.66%), Postives = 88/123 (71.54%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            +LLV  +PNV +A TL S+FY   +LFAG+V+P+P IP+WWIW+YYLSPTSW L G LTSQYGD++KEI+ F E K ++ FLE+YFG+ +D                 SLFAFF+G+LNFQ++
Sbjct: 1270 MLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.265e-35
Identity = 66/123 (53.66%), Postives = 91/123 (73.98%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            +L+VA +PN+ +A TL S F++  +LFAGFV+P+ +IPKWWIW+YYLSPTSW LEG L+SQYGD++KEI VF E K++++FLE+YFG+ HD                 SLFAFF+ +LNFQ++
Sbjct: 1275 MLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITVFGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.569e-35
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            + L++ +PN  VA+ L S F+TT+++FAGF+IP+PQIPKWW+W YY++PTSWTL    +SQYGDI ++I  F E KT+ASFLE+YFGFHHD                 +++AFFV +LNFQ+R
Sbjct: 1291 MFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.274e-35
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            + LV+ +PN  VA+ L S FY  ++LF+GF+IPQ Q+P WWIWLYYL+PTSWTL G ++SQYGDI +EI VF ++ T+A FL++YFGFHHD                 S+FAFFVG+LNFQ+R
Sbjct: 1328 MFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 7.274e-35
Identity = 65/123 (52.85%), Postives = 92/123 (74.80%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            +L+VA +PN+ +A TL S+F++  +LFAGFVIP+ +IPKWWIW+YYLSPTSW LEG L+SQYGD+DKEI+VF E K +++FLE+YFG+ H+                 +LFAFF+ +L+FQ++
Sbjct: 1278 MLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFMSKLSFQKK 1400          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.744e-23
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMV-FIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            ++ V+ SPN+ VAS L +AFYT ++LF+GF IP+P+IPKWW+W Y+L P +WT+ G + SQYGD++  I V    ++ +  F+++YFG+  D                   +A+ +  LNFQQR
Sbjct: 1386 MMNVSVSPNLQVASILGAAFYTLFNLFSGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITVPGQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.744e-23
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMVF--IENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            ++ V+ +PN  VAS   SAFY  ++LF+GF IP+P+IPKWWIW Y++ P +WT+ G + SQYGD++  I V     + T+  ++E+++GF  D                  +FAF +  LNFQ R
Sbjct: 1345 MMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CK937340 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.387e-23
Identity = 50/125 (40.00%), Postives = 74/125 (59.20%), Query Frame = 2
Query:    2 LLLVAXSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEG*LTSQYGDIDKEIMV--FIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 370
            ++ VA +PN  VA+    AFY  ++LF+GFVIP+P+IPKWWIW Y++ P +WT+ G + SQYGD++  I V     + TI  ++E ++G+  D                  +FAF +  LNFQQR
Sbjct: 1292 MMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          
The following BLAST results are available for this feature:
BLAST of CK937340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDR3_TOBAC7.029e-3857.72Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB43G_ARATH1.466e-3553.66ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB42G_ARATH1.914e-3553.66ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB41G_ARATH3.265e-3553.66ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB33G_ARATH5.569e-3552.03ABC transporter G family member 33 OS=Arabidopsis ... [more]
AB37G_ARATH7.274e-3554.47ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB30G_ARATH7.274e-3552.85ABC transporter G family member 30 OS=Arabidopsis ... [more]
PDR15_ORYSJ3.744e-2340.32Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB36G_ARATH3.744e-2339.20ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB29G_ARATH6.387e-2340.00ABC transporter G family member 29 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_B02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937340 ID=CK937340; Name=CK937340; organism=Citrus sinensis; type=EST; length=508bp
ACTGTTGCTTGTTGCANNNTCACCAAATGTTACCGTTGCTTCAACTCTAT
TCTCAGCTTTCTATACCACTTACAGCCTTTTTGCCGGATTTGTGATTCCT
CAGCCGCAAATTCCAAAATGGTGGATCTGGTTATATTATCTTAGTCCTAC
ATCCTGGACATTGGAGGGATAGCTCACTTCACAATATGGAGATATTGACA
AAGAAATTATGGTTTTTATAGAAAACAAAACAATAGCTTCATTTTTAGAG
GAGTACTTTGGGTTTCACCATGACCATTTGGCAGTTGTAGCAGTTGCTCT
TATTGTATTTCCAGTAGTTTTGGCTTCTTTGTTTGCATTTTTTGTAGGGC
GGTTGAACTTTCAGCAAAGGTGAACCTGTAGAAAGGATTAAGCAATTAAG
GGCATTTGATCATATGTAACTTTTTTTCTGAGATACAGAAACTTGTGTGT
GGAAACCGAGTGTGAGGTCAAATTTACACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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