CK937338

Overview
NameCK937338
Unique NameCK937338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.416e-35
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 2
Query:   71 VLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 325
            VLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.044e-34
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 2
Query:   71 VLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 325
            VLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:    2 VLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.465e-32
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 2
Query:   71 VLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            VLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.913e-32
Identity = 65/83 (78.31%), Postives = 69/83 (83.13%), Query Frame = 2
Query:   71 VLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            VLQNDIDLL+PP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:    2 VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.339e-30
Identity = 63/85 (74.12%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   71 VLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 325
            VL +DIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:    2 VLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.564e-26
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   86 IDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            +DLLNP              VQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   86 IDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            +DLLNP              V +P SFFMDVKC GCF ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    5 VDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.272e-24
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.272e-24
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CK937338 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.272e-24
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of CK937338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH1.416e-3581.1840S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU2.044e-3481.1840S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH1.465e-3277.1140S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH1.913e-3278.3140S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE2.339e-3074.1240S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO4.564e-2669.2340S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_NEUCR3.271e-2465.3840S ribosomal protein S27 OS=Neurospora crassa GN=... [more]
RS27_XENLA4.272e-2466.2340S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT4.272e-2466.2340S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE4.272e-2466.2340S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004511_C10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937338 ID=CK937338; Name=CK937338; organism=Citrus sinensis; type=EST; length=559bp
GGGGACCGCCTGCTGACCCACTCTCTGCTGCTAGGGTTTTCTAGGTTCTC
CTGGAGCATTTGCAAACACGGTTCTCCAAAATGATATTGATTTGTTGAAT
CCTCCGGCTGAGCTTGAGAAGAAGAAGCACAAGCTTAGGCGTCTTGTTCA
GTCACCCAATTCCTTTTTCATGGATGTGAAATGTCAGGGTTGCTTCAACA
TAACAACTGTTTTCAGCCACTCTCAAACTGTGGTGGTTTGTGGCAACTGC
CAGTCCGTTCTATGCCAGCCCACTGGTGGACGTGCCAGACTCACTGAGGG
ATGTTCTTTCCGGAGAAAGGGTGACTAAGTGCTACTAAATGATGGAAGAA
TTTTGTCACATCCTTTCTTTTTTCCCCCTTTTTCCTCTTTTGTTATGATG
TATTAATTTTGATATAACTTGTGGTGTGGTTGATCTTATGTTTGAAAGAT
TATATTTCTAAGTGAATTTTTTGCNAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAANNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
back to top