CK937336

Overview
NameCK937336
Unique NameCK937336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_CITSI (ATP synthase subunit b, chloroplastic OS=Citrus sinensis GN=atpF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG
Sbjct:   60 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_LACSA (ATP synthase subunit b, chloroplastic OS=Lactuca sativa GN=atpF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNG
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_GOSHI (ATP synthase subunit b, chloroplastic OS=Gossypium hirsutum GN=atpF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQFRVNG
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_GOSBA (ATP synthase subunit b, chloroplastic OS=Gossypium barbadense GN=atpF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQFRVNG
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_POPTR (ATP synthase subunit b, chloroplastic OS=Populus trichocarpa GN=atpF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNG
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_POPAL (ATP synthase subunit b, chloroplastic OS=Populus alba GN=atpF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNG
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_HELAN (ATP synthase subunit b, chloroplastic OS=Helianthus annuus GN=atpF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRKIEIEAD+FRVNG
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKIEIEADEFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_PANGI (ATP synthase subunit b, chloroplastic OS=Panax ginseng GN=atpF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQFRVNG
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_GUIAB (ATP synthase subunit b, chloroplastic OS=Guizotia abyssinica GN=atpF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEAD+FRVNG
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADEFRVNG 99
[Close]
BLAST of CK937336 vs. ExPASy Swiss-Prot
Match: ATPF_VITVI (ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = -3 
Query:    1 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNG 120
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ+RVNG
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQYRVNG 99
The following BLAST results are available for this feature:
BLAST of CK937336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPF_CITSI3.884e-14100.00ATP synthase subunit b, chloroplastic OS=Citrus si... [more]
ATPF_LACSA3.635e-1287.50ATP synthase subunit b, chloroplastic OS=Lactuca s... [more]
ATPF_GOSHI4.748e-1287.50ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_GOSBA4.748e-1287.50ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_POPTR6.201e-1287.50ATP synthase subunit b, chloroplastic OS=Populus t... [more]
ATPF_POPAL6.201e-1287.50ATP synthase subunit b, chloroplastic OS=Populus a... [more]
ATPF_HELAN6.201e-1287.50ATP synthase subunit b, chloroplastic OS=Helianthu... [more]
ATPF_PANGI8.099e-1285.00ATP synthase subunit b, chloroplastic OS=Panax gin... [more]
ATPF_GUIAB8.099e-1285.00ATP synthase subunit b, chloroplastic OS=Guizotia ... [more]
ATPF_VITVI1.804e-1182.50ATP synthase subunit b, chloroplastic OS=Vitis vin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_C08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937336 ID=CK937336; Name=CK937336; organism=Citrus sinensis; type=EST; length=629bp
TCCATTCACTCGAAACTGATCTGCTTCTATTTCTATTTTTCGTAACCGGG
CCCGGGCTTTTTCCAGCCGTTCAATGGCCCCTCTCTGCAGTTCTTCTGAA
TTTCGAATACTATTCAAAATCCTCAGTTTGCGATTATCTAATAAATCACT
TAATGAAAGTAGATTATCTTTCCATTCATCTCAAAACTTCGATGATCCCT
TCCCGAACCAAACATGAATTTTTCGATTCATTTGGCTCTCCCACTCAATT
ACGTCAACTACTTATGTATGGGGGGGGTTCCCATATCTTTTTTTAATGTA
ATGAGCCTATCCTCTCCCTCTCTTCTCTATTCATATTCCAAAATGAATCT
TGCGACTGATCCCTAATCCAAGAACAGAATATTCGGAGGACTCTTCTGAC
CAAATCAAAATATATAATTGTCAGCAAAGTTGTTTCTTTTTTTCTTCAAA
TCCAAAGAATTCTTCTTACTTTATATGGAGGTCATCGATTCAGCATAAAT
AAGGGTTGGTTGAAATACCTATTTTTCCAATATTTTCCAATCAAATTTCC
AATACCAATAAAAGGCTCAAATCTTTTTATCAACATGAGTGTTTTATATC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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