EY665871

Overview
NameEY665871
Unique NameEY665871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665871 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.825e-52
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 1
Query:  136 MVGT-NSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPGSTRTSSPPINAKSSFVFHPLDEYPTSSG 474
            MVG+ NSL GLQDHLKLAREYALEG YDTS+IFFDGAIAQINKHLNTLDDPL R KWMNVKKA++EET+VVKQLDAERRAFKE P   R +SPPIN KSSFVF PLDEYPTSSG
Sbjct:    1 MVGSSNSLAGLQDHLKLAREYALEGSYDTSVIFFDGAIAQINKHLNTLDDPLARTKWMNVKKAIMEETEVVKQLDAERRAFKEAPTGRRAASPPINTKSSFVFQPLDEYPTSSG 114          

HSP 2 Score: 31.5722 bits (70), Expect = 8.825e-52
Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 2
Query:  509 PAGTLRAGDPRGAG*VGIKTPPHDGAWTRGGSTR 610
            P   + +  P  AG  G +  P DGAW RG +TR
Sbjct:  127 PTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTR 160          
BLAST of EY665871 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  151 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFK 378
            +L  + D+ K  REYAL G YD+S++++ G I QI++H  ++ DP ++ KW  V++ LLEE + VK + +   +FK
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIHRHCQSVRDPAVKGKWQQVRQELLEEYEQVKSIVSTLESFK 77          
BLAST of EY665871 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  151 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFK 378
            +L  + D+ K  REYAL G YD+S++++ G I QI +H  ++ DP ++ KW  V++ LLEE + VK + +   +FK
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSIRDPAVKGKWQQVRQELLEEYEQVKSIVSTLESFK 77          
BLAST of EY665871 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  151 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFK 378
            +L  + D+ K  REYAL G YD+S++++ G I QI +H  ++ DP I+ KW  V++ LLEE + VK + +   +FK
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIVSTLESFK 77          
BLAST of EY665871 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  151 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFK 378
            +L  + D+ K  REYAL G YD+S++++ G I QI +H  ++ DP ++ KW  V++ LLEE + VK + +   +FK
Sbjct:    2 NLAEICDNAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSVRDPAVKGKWQQVRQELLEEYEQVKSIVSTLESFK 77          
The following BLAST results are available for this feature:
BLAST of EY665871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KTNA1_ARATH8.825e-5284.21Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KATL1_SORAR6.805e-1139.47Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT6.805e-1139.47Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN6.805e-1140.79Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA8.887e-1139.47Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665871 ID=EY665871; Name=EY665871; organism=Citrus sinensis; type=EST; length=849bp
ATTTACTCGTTCTTCTCCTCTTTTCTCTCAACCACTTAAAACGTCGCCGT
CACAAGTCCTCTCTTCACAGCTTCACCAAATCAGGTGAATTTAAATCAGA
TGAAACCCTAGAATTTTGGGCGTAATTTTAACAAGATGGTAGGGACAAAT
TCGCTAGTGGGATTGCAAGATCACTTGAAGCTTGCCAGAGAGTACGCGCT
AGAAGGACTTTACGACACCTCGATCATCTTCTTCGACGGTGCCATTGCTC
AGATCAACAAGCACCTAAATACGCTTGATGATCCATTAATACGTGCAAAA
TGGATGAATGTCAAGAAAGCTCTGTTGGAGGAAACAGATGTTGTGAAGCA
ATTGGATGCTGAGAGAAGAGCATTTAAGGAAGTTCCAGGAAGCACGCGTA
CTTCTTCACCGCCAATTAATGCTAAATCTTCGTTTGTTTTTCACCCGTTG
GATGAGTATCCAACTTCCTCAGGCGCCTCAATGGATGATCCTGATGTGCG
GAGGCCACCCAGCCGGGACACTTCGAGCAGGAGACCCCCGAGGGGCTGGG
TAAGTTGGCATCAAAACACCCCCCCACGACGGGGCCTGGACCCGCGGCGG
CAGCACAAGAAACTCCAACCCCGCCCCCCGCCCCACACGCACCTAGCCGC
TAACGGGTCGTACCACGGGTGCCCCCGCGCGCAACCCCCCCCGCCCAGTC
CCCCCACCGACCTCAGACCTCCCGACCGACTCCTGTCCCCGCCCCCTCCG
CCCCCTAACGCGGCCGGCAGGTCTGTCCACCGGGTCCACCCCCCGCCGTG
GCCCAGACGCTACACTCTCCTGTCCTGCCGCCCTCTCACCCGACTCCAC
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