CX675292

Overview
NameCX675292
Unique NameCX675292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5489 contig Csv1_Contig5489:1..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: DHRS7_DICDI (Dehydrogenase/reductase SDR family protein 7-like OS=Dictyostelium discoideum GN=DDB_G0274201 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 69/238 (28.99%), Postives = 107/238 (44.96%), Query Frame = 2
Query:    5 FLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFA-----------LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYT-DITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE 682
            F  IV  ++   ILP     ++   F+   +R         KVV+ITGASSGIG                            DQ E + S F            L I  D++ ++DCK+ V+  +E + ++D  V +AG   +  F     DI+     M++N++     T+    YL+Q+ G IIV++S AG       + Y++SK A +  + +LR E   +I ITIV PG I +E
Sbjct:   12 FPYIVLRLIVSIILPIASLYFIYCNFIAPKLREKPESSYKNKVVIITGASSGIGAELAKKYARLGCKVTIVARRL-------DQLEKVKSSFLKDYSRVNDDDILVIKGDLTLIDDCKNMVEKVIEKWSKIDICVWNAGSGSLIEFSKLQGDISIYRDNMELNYFSLVNCTHLVYKYLEQSHGSIIVISSLAGKFGTALRTSYSSSKHAVMGFFNSLRNE-TKNIQITIVCPGFILTE 241          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 69/191 (36.13%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  125 GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI--VTPGLIESE 682
            GKVVLITGA SGIGK                           +  + MG   A  I  DV+K  D +  V  T+E FGRLD LV +AG+VP    E+ +  D  K    M +N  G    + +A+  +K+  G +IV V+S AG +  PR   Y+ SKAA + L  +L V++  D GI +  V PG  +SE
Sbjct:    5 GKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAF-IFGDVAK--DAEQIVKKTVETFGRLDILVNNAGIVPYGNIEETSEEDFDK---TMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDY-VDYGIRVNAVCPGTTQSE 188          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 65/230 (28.26%), Postives = 106/230 (46.09%), Query Frame = 2
Query:  116 DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD------VSRSFTYMHN 775
            +V  KVV+ITGASSGIG+                            +   +G         DV+K ++    ++     FGR+D L+ +AG++P    E      +    +D+N  G  YG    +PY+ KQ  G II +AS AG +  P  + Y  +K A  A+ E LR E    G +I  TI++PG + +E+T     +K+ K ++D+  ++      ++R+  Y  N
Sbjct:    3 NVKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKIQQK---VGHDSVSIKKTDVTKPDEVNALIETAYNDFGRIDVLINNAGLMPQSFLEKNKQ-DEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLASVAGHVVFPGSAVYCGTKYAVRAITEGLRQEEAIVGSNIRTTILSPGAVSTELT-DHISDKDMKQDIDELYKNAIKPDAIARAINYAIN 227          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 60/211 (28.44%), Postives = 102/211 (48.34%), Query Frame = 2
Query:  119 VAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD 745
            V  KV ++TGASSGIG+                           + A+ + +P A  + ADV+   +    +   ++HFG +D +V  AG        DY ++ +    +D+N  G+ +     +PYL KQ+ G II +AS +G+ P    + Y A+KAA  A+ ++L  E     + +T ++PG++++ +T G    +  KLE  Q I D
Sbjct:    4 VKEKVAVVTGASSGIGE---AIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTP-AKVVSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDY-NVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEGTDFGERKKLEA-QNIAD 208          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 60/211 (28.44%), Postives = 102/211 (48.34%), Query Frame = 2
Query:  119 VAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD 745
            V  KV ++TGASSGIG+                           + A+ + +P A  + ADV+   +    +   ++HFG +D +V  AG        DY ++ +    +D+N  G+ +     +PYL KQ+ G II +AS +G+ P    + Y A+KAA  A+ ++L  E     + +T ++PG++++ +T G    +  KLE  Q I D
Sbjct:    4 VKEKVAVVTGASSGIGE---AIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTP-AKVVSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDY-NVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEGTDFGERKKLEA-QNIAD 208          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: DHI1L_DANRE (Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Danio rerio GN=hsd11b1l PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 61/246 (24.80%), Postives = 110/246 (44.72%), Query Frame = 2
Query:  101 TINAEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTD-AGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GDIGITIVTPGLIESEITGGK---FLNKNGKLEVDQEIRDVSRSFT-YMHNFHPFFLFYSSTYK 814
            + N E + G  VL+TGAS+GIG+                            +   MG+  A  IPAD++   D    V   +E  G LD+LV +  G  P  +++   D+      +++NF         A+P L+++KG I+VV+S  G +  P    Y ++K A    +  L+ E      ++ ITI   GLI+++    K   ++N       +  ++ +    T    +F+P++ FY++ ++
Sbjct:   25 SFNEESLKGARVLVTGASTGIGEQLAYHYARLGAQIVITARRGNVLEQVVSKCREMGAQKAFYIPADMANPSDADLVVKYAIEQLGGLDYLVLNHIGPSPYQMWDG--DVQHTRWLLEVNFLSYLQMAQKALPTLEKSKGSIVVVSSLLGKICGPFALPYASTKFALNGFFGGLQNELAMQKSNVSITICILGLIDTDSAMEKIKGYINMTAYPSHEAALQIIQAGATRQSESFYPWYTFYATLFR 268          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: YQ53_SCHPO (Uncharacterized oxidoreductase C162.03 OS=Schizosaccharomyces pombe GN=SPCC162.03 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 47/137 (34.31%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  284 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF--GGDIGITIVTPGLIESE 682
            L +  DV+ V+  +         FG +D ++ +AG   +  FE Y +I +    M++NFWG AY T  A+  ++++   G+I+ ++S AG+ P P +S YNASK A   L +T+  E     +I ITIV PG +++E
Sbjct:   50 LKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESY-NIEEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNWNIAITIVQPGGMQTE 185          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 60/216 (27.78%), Postives = 95/216 (43.98%), Query Frame = 2
Query:  116 DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGV---VPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEI 739
            D+ GKVV ITGA+SG+GK                            +  +     A+ +  DV+K ED K+ V   ++ FG LD ++ +AG+   VP      +D+  +      +  N  G+  G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+    I +  + PG I + I   KF +   K +V+  I
Sbjct:    4 DLKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAGLENPVPSHEMPLKDWDKV------IGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVESMI 213          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: DHI1L_CHICK (Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Gallus gallus GN=HSD11B1L PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 53/198 (26.77%), Postives = 91/198 (45.96%), Query Frame = 2
Query:  101 TINAEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTD-AGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDIGITIVTPGLIESE 682
            T   E ++G  VL+TGAS+GIG+                            +   +G+     IPAD+S   +    V   +++ G LD+LV +  GV P  ++    D+      M +NF+        A+P L++  G ++VV+S  G +P P  + Y+A+K A    + +LR E      ++ IT+   GLI+++
Sbjct:   26 TFQPEQLSGARVLLTGASAGIGEQMAYHYATFGAEIVLTARREAVLQEVMKKCLTLGAKKVFYIPADMSSPSEPDRVVQFAVQNLGGLDYLVLNHIGVSPFQMWGG--DVEHTRWLMQVNFFSYVALATAALPTLEKNHGSVVVVSSLTGKIPTPFTTSYSATKFALDGFFSSLRHELTMQKRNVSITLCILGLIDTD 221          
BLAST of CX675292 vs. ExPASy Swiss-Prot
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 59/206 (28.64%), Postives = 92/206 (44.66%), Query Frame = 2
Query:  119 VAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA-IPADVSKVEDCKHFVDVTMEHFGRLDHLVTDAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVTPGLIESEIT----GGKFLNKNGK 718
            +A +V ++TG++SGIG                              A+L G   ++A I   V K ED +  V   +EH G +D LV  AGV P+      T        + +N    A      +PY++  +G +I+V+S A + P   +  YN SK A + L  TL +E    DI +  V PG+I+++ +    G + L KN K
Sbjct:   12 LANRVAVVTGSTSGIG--FAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENRRGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFSKVFHGNESLWKNFK 215          
The following BLAST results are available for this feature:
BLAST of CX675292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DHRS7_DICDI1.686e-1428.99Dehydrogenase/reductase SDR family protein 7-like ... [more]
Y325_THEMA2.875e-1436.13Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
Y1627_STAS14.905e-1428.26Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]
Y2049_STAEQ1.864e-1328.44Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES1.864e-1328.44Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
DHI1L_DANRE2.691e-1224.80Hydroxysteroid 11-beta-dehydrogenase 1-like protei... [more]
YQ53_SCHPO4.591e-1234.31Uncharacterized oxidoreductase C162.03 OS=Schizosa... [more]
DHG_BACSU4.591e-1227.78Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
DHI1L_CHICK5.996e-1226.77Hydroxysteroid 11-beta-dehydrogenase 1-like protei... [more]
DHRS2_HUMAN1.023e-1128.64Dehydrogenase/reductase SDR family member 2 OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61C06-F11-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675292 ID=CX675292; Name=CX675292; organism=Citrus sinensis; type=EST; length=832bp
TGAGTTCTTGAACATCGTAGCTCCTGTTTTAACCATTGCAATACTGCCTT
CTTTCCTGCCTCTGTACCTATTGTTCAAGTTTCTTCATTTCGTTATACGA
ACCATAAATGCTGAAGATGTTGCTGGCAAAGTAGTTCTCATAACTGGAGC
ATCCTCAGGCATCGGAAAGCATCTTGCTTATGAGTATGCTAGAAGAAGAG
CTCGTTTAGTCTTAGTTGCAAGAAGAGAGCGTCAGCTCCGAGAAGTCGCC
GACCAAGCCGAGCTGATGGGCTCTCCTTTTGCTCTTGCCATCCCTGCAGA
TGTTTCCAAAGTCGAAGACTGTAAGCATTTTGTTGATGTAACGATGGAGC
ATTTCGGTAGATTGGATCACCTAGTGACCGATGCCGGTGTTGTTCCAATG
TGCTTGTTTGAAGATTACACTGATATTACGAAACCTGCGCCGGCTATGGA
CATCAACTTCTGGGGCTCAGCATACGGCACCTATTTCGCAATTCCGTACC
TAAAGCAGACAAAAGGAAAGATCATTGTAGTTGCCTCAGCTGCTGGATGG
TTACCTCCGCCTAGAATGAGCTTCTATAATGCAAGTAAAGCCGCAAAAAT
TGCCTTATACGAGACATTGAGGGTCGAATTTGGAGGAGACATAGGAATAA
CAATTGTGACTCCTGGGTTGATCGAATCAGAAATTACAGGAGGGAAGTTC
CTAAACAAGAATGGCAAATTGGAAGTAGATCAAGAAATCAGAGATGTAAG
CCGATCCTTCACATATATGCACAATTTCCATCCATTTTTTCTATTCTATT
CTTCCACTTACAAACTTAAGAGTATAATGCTG
back to top