CK937318

Overview
NameCK937318
Unique NameCK937318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.837e-53
Identity = 111/211 (52.61%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   52 SYILSEFGWNLQEHESSTSYFAADHERSDLAGNISSSFPAETTTDGGGLTNPGRXXXXXXXXXXXXXXXXXXXXXXXTGSGGK--PPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLIN-HEAAAFASHLTXXXP---PYYYHQ 666
            S ILS+FGWNL            D + +   G      P   T+                                 T S  K  PPE P K +KK QKRIRQPRFAFMTKS+VD+LEDGYRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSS+DP+IVITTYEGQHCH T+GFPRGG++  H+  +F SH     P   PYYY +
Sbjct:   34 SNILSDFGWNLHHSSDHPHSLRFDSDLTQTTG----VKPTTVTSSCSSSAAVSVAVTSTNNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFPRGGILTAHDPHSFTSHHHLPPPLPNPYYYQE 240          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 1
Query:  286 GSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRG 591
            G G    ++  + +KKG+K+ R+ R AFMTKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DP+IVITTYEG+H H      RG
Sbjct:   99 GVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRG 200          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.759e-35
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1
Query:  295 GKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRG-------GLINHEAAAFASHLTXXXPPYY 657
            G  P++  KA+KK QK+ R+ RFAF+TKS++D+L+DGYRWRKYGQKAVKNSP+PRSYYRCT   C VKKRVERSS+DP+IV+TTYEGQH H     PRG        +++H A   +S       P Y
Sbjct:  189 GTKPQL--KAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHGATTASSSSFSIPQPRY 314          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 1
Query:  319 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 567
            KA+K  QKR R+ R AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT + C VKKRVERS  DP+ V+TTYEGQH H
Sbjct:  148 KAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.851e-34
Identity = 71/105 (67.62%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  319 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHL 633
            K +K   K+ R+PR +FMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DPT+VITTYEGQH H      RG   +  AA F++ L
Sbjct:  146 KTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGS--SAAAAMFSADL 248          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 1
Query:  319 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 567
            K +KK +K+ ++PR +FMTK+EVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DPT+VITTYE QH H
Sbjct:  158 KTKKKEEKK-KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNH 239          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.186e-28
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:  331 KGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 567
            K ++++R+PRF F T SEVD L+DGYRWRKYGQK VKN+  PRSYYRCT  KC VKKRVER ++DP +VITTYEG+H H
Sbjct:  201 KTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.559e-27
Identity = 55/83 (66.27%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  319 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 567
            K + K ++++R+PRF F TKS+VD L+DGY+WRKYGQK VKNS  PRSYYRCT++ C VKKRVER SED  +VITTYEG+H H
Sbjct:  119 KNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1
Query:  322 ARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 567
            +RK+ +K++  P+ +F+T+SEV HL+DGY+WRKYGQK VK+SPFPR+YYRCT + C VKKRVERS  DP+ VITTYEGQH H
Sbjct:   95 SRKQTKKKV--PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTH 174          
BLAST of CK937318 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 1
Query:  319 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 567
            K R K +K+ R+ R+AF T+S+VD L+DGYRWRKYGQKAVKN+PFPRSYY+CT   C VKK+V+R   D  +V+TTY+G H H
Sbjct:   39 KPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121          
The following BLAST results are available for this feature:
BLAST of CK937318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK57_ARATH4.837e-5352.61Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK71_ARATH3.483e-3566.67Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK48_ARATH7.759e-3557.03Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK23_ARATH2.948e-3479.52Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK28_ARATH3.851e-3467.62Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRKY8_ARATH9.484e-3375.90Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK13_ARATH9.186e-2868.35Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK12_ARATH4.559e-2766.27Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK68_ARATH1.016e-2665.85Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK45_ARATH8.598e-2661.45Probable WRKY transcription factor 45 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004511_F06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937318 ID=CK937318; Name=CK937318; organism=Citrus sinensis; type=EST; length=672bp
CGAGGCCAGTCGAGCTGGAAGCTAGGGGAGCCACCGGACGCGGGCTGCGT
GAGTTATATTTTGAGCGAGTTTGGATGGAATCTGCAAGAGCATGAGAGTT
CGACCAGCTACTTCGCTGCTGATCATGAAAGATCCGATTTGGCGGGAAAT
ATCAGCAGCAGTTTTCCGGCCGAAACTACTACTGACGGTGGCGGTTTGAC
AAATCCTGGAAGGTCTGCTGACGTGTCGACTTCGAATCCGTCGGTTTCGT
CGAGCTCCAGCGAGGATCCGACGGAGAAGTCTACGGGCTCCGGCGGTAAA
CCTCCTGAGATACCAAGCAAAGCAAGAAAGAAAGGACAAAAGCGAATTCG
GCAGCCACGTTTTGCATTTATGACCAAGAGTGAAGTTGATCACCTTGAAG
ATGGATACAGATGGCGAAAGTATGGTCAGAAGGCTGTAAAAAATAGTCCG
TTCCCTAGGAGCTACTACCGCTGCACAAACAGTAAATGTACAGTGAAGAA
GAGGGTGGAACGATCATCTGAAGATCCCACCATTGTAATTACTACGTATG
AAGGTCAACACTGCCATCATACCGTTGGATTTCCTCGTGGTGGACTAATT
AATCATGAAGCAGCTGCTTTTGCTAGCCATTTGACTCANNNNNNCCCACC
ATATTATTATCATCAGGGAGTT
back to top