CK937313

Overview
NameCK937313
Unique NameCK937313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQKAGGD 238
            LAVLQFYKVDD+GKVQRLRKE PNAECGAGTF ANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQKAGGD 238
            LAVLQFYKVDD+GKVQRLRKE PNAECGAGTF ANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.323e-24
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQKA 229
            LAVLQFYKVDDSGKVQRLRKE PN ECGAGTF ANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.747e-23
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQKAG 232
            LAVLQFYKVD SGKVQRLRKE PNA CGAGTF A+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.199e-23
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQKAG 232
            LAVLQFYK+D SGKVQRLRKE PNA CGAGTF A+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.077e-22
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQK 226
            LAVLQFYKVDD+GKV RLRKE PNAECGAGTF ANH DRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2
Query:   68 LAVLQFYKVDDS-GKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVY-QKA 229
            LAVLQFYKVDD+ GKV RLRKE PNA+CGAGTF ANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.761e-20
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 2
Query:   68 LAVLQFYKVDDS-GKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVY-QKA 229
            LAVLQFYKVDD+ GKV RLRKE PN +CGAGTF ANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.761e-20
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 2
Query:   68 LAVLQFYKVDDS-GKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVY-QKA 229
            LAVLQFYKVDD+ GKV RLRKE PN ECGAG F ANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CK937313 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.429e-19
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   68 LAVLQFYKVDDSGKVQRLRKERPNAECGAGTFKANHFDRHYCGKCGLTYVYQKA 229
            LAVLQFYKVD SGKVQRL+KE P+  CG GTF A+HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
The following BLAST results are available for this feature:
BLAST of CK937313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS27A_SOLTU3.512e-2692.9840S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC3.512e-2692.9840S ribosomal protein S27a OS=Solanum lycopersicum... [more]
RS27A_LUPAL7.323e-2492.5940S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH4.747e-2389.0940S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH6.199e-2387.2740S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]
RS27A_ASPOF3.077e-2290.5740S ribosomal protein S27a OS=Asparagus officinali... [more]
RS27A_HORVU7.578e-2187.5040S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_ORYSJ3.761e-2085.7140S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE3.761e-2085.7140S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
R27AA_ARATH1.429e-1977.7840S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_E11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937313 ID=CK937313; Name=CK937313; organism=Citrus sinensis; type=EST; length=501bp
GGGGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACA
AGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGAT
TCTGGAAAGGTCCAGAGGCTGAGGAAGGAGCGTCCGAATGCTGAGTGTGG
AGCCGGCACCTTCAAGGCTAACCACTTTGACAGGCACTACTGCGGCAAGT
GTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGATCGAGATTA
GGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGGTTTTTGTG
GTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATATACTTGTTT
GCTTGAGCGTTTTAATTAAATGGTTATCTGTTTTAAATTTTAAAAAAAAA
AAAAAAAAAAAATTCCCAAAAAAAANNNNNNAAACCAAANNNNATCANNN
NTAAAAACAAAACCCCCAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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