EY665870

Overview
NameEY665870
Unique NameEY665870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665870_ssr491 microsatellite EY665870_ssr491:491..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665870 vs. ExPASy Swiss-Prot
Match: DDB2_ARATH (Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana GN=DDB2 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.449e-49
Identity = 91/143 (63.64%), Postives = 114/143 (79.72%), Query Frame = 2 
Query:   11 EKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDTRTNSTSGEPILIHRKGNQSCWSALKSYFDPELAASCGN 439
            +KGQ+GVWDF KV EK VYGNIHS  VNN+RF+PTND  VY+ASSDGT+  TDLETG + +L+N+NP+GW G  +W+MLYGMDIN EKGVVL ADNFGFL+++D RTN+++GEPILIH++G++ C         PEL  SCGN
Sbjct:  192 KKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVYSASSDGTIGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMIDHRTNNSTGEPILIHKQGSKVCGLDCNP-VQPELLLSCGN 333
The following BLAST results are available for this feature:
BLAST of EY665870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DDB2_ARATH2.449e-4963.64Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665870 ID=EY665870; Name=EY665870; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGAGAAAGGACAAGTTGGAGTCTGGGATTTTTACAAAGTAT
CTGAAAAGATAGTTTATGGAAACATACATTCCTGTATAGTCAATAACATT
AGGTTTAACCCTACAAATGATGGTACTGTTTATGCTGCATCCTCTGATGG
AACTGTCAGTTGCACGGACTTGGAGACTGGCTTGGCGTTATCTTTGATGA
ACGTTAACCCTAATGGATGGCATGGCCCACGTACTTGGAGGATGCTTTAT
GGCATGGATATCAATCCAGAGAAAGGGGTTGTACTTGTTGCTGATAATTT
TGGTTTTCTCTACCTGGTGGATACACGAACCAATAGTACAAGTGGGGAGC
CAATCTTGATCCACCGAAAAGGTAACCAAAGTTGCTGGTCTGCCCTGAAA
TCCTATTTCGACCCGGAACTGGCCGCAAGTTGTGGAAATCATCCACCCTC
GCTCCTCTACCGCCACCACTCCCGGGACTCCAATCCGGCATCTCTCTCTC
CGCGAGGTTTAAACAGAGAACCGCAACCTACAACTCCCATACCTCACTCC
CTCATCGTACAACACACCCACACAATCTCCCCTGACACCCCCAATCCCGA
GCAGCGACAGCCAAACTACGCGCCGGTCCCACCTCCCCACAAACCACCTC
CCGCACCCCCCAAGCCACCCCACTCGCCCCCTCCCCACAACCCCTACGCC
CCCGACACCCCCCTCCGCCCCCACATCCCCCACCCACATAAACACCCCAA
ACCTACTCACCCCCACATCGCCCCACGGACACGACGATGCGACCCCCTCC
CCGTCCCCACACGGCCCTGCACCCCCACCTCCCCCCCCCCCCCCACCCCC
TTACCGCTCGCTCCCACCCCGCACATCAACCCACACCCCCCCCCAACCCG
CACCCCCATCCACTACAC
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