CX046919

Overview
NameCX046919
Unique NameCX046919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:288..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.323e-34
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    8 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            A AITCGQVT SLAPCI Y+RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C+ V+
Sbjct:   22 AHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    8 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            AQAITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C+ V+
Sbjct:   24 AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.618e-32
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 2
Query:   17 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            ITCGQV+ SLAPCI Y+R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.707e-32
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 2
Query:   17 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            ITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.147e-32
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    8 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            AQA+TCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   24 AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.336e-31
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 2
Query:   17 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            ITCGQV+ SLAPCI YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.985e-31
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 2
Query:   17 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            ITCGQV+ +LAPCI Y++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.204e-31
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:    8 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            A AITC QV+ +LAPCI Y+RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   22 AHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.978e-30
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 2
Query:   11 QAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            +A++CGQV+ SLAPCI YL  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKIS STDCSKV+
Sbjct:   24 EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.851e-28
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    8 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            A+AITCGQVT +LAPC+ YLR+ GP+   CC GV++L  +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:   22 AEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CX046919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO1.323e-3469.15Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU3.260e-3364.89Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_PRUAR1.618e-3267.03Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUPE4.707e-3264.84Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PRUAV6.147e-3261.70Non-specific lipid-transfer protein OS=Prunus aviu... [more]
LTP1_MORNI2.336e-3170.33Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDO3.985e-3162.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO5.204e-3160.64Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_HELAN1.978e-3064.52Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_TOBAC1.851e-2863.83Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046919 ID=CX046919; Name=CX046919; organism=Citrus sinensis; type=EST; length=522bp
CCTGAGTGCTCAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCAC
CATGCATCGTTTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGC
AACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCA
AACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCA
ACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCT
TACAAGATCAGCATCTCCACTGACTGCTCTAAGGTCCGGTGAACAGGAAT
CTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAAATGTATA
ATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTACACTTTG
TACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTATTGTCTT
TGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAAATGAAA
TCTTGCCTTGTGTTCAAAAAAA
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