CK937296

Overview
NameCK937296
Unique NameCK937296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.903e-87
Identity = 150/202 (74.26%), Postives = 172/202 (85.15%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTE 699
            +  +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM+KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA++ E GKV+FVPW E
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVE 217          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.485e-87
Identity = 152/201 (75.62%), Postives = 171/201 (85.07%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--VENGKVVFVPWTE 699
            K G+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  VE+GKVVFVPW E
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVE 218          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 4.686e-86
Identity = 151/201 (75.12%), Postives = 172/201 (85.57%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTE 699
            K GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH +V++GKVVFVPWTE
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTE 217          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.276e-83
Identity = 145/200 (72.50%), Postives = 162/200 (81.00%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTE 699
            K G + PSRA L K AR     K  +  K+ CQATSIPADRVPDM KRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H ++ E GKVVFVPW E
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVE 218          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.849e-83
Identity = 149/204 (73.04%), Postives = 172/204 (84.31%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTE 699
            K G+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM+KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA++++GKVVFVPW E
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVE 216          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 1.843e-82
Identity = 148/204 (72.55%), Postives = 170/204 (83.33%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTE 699
            K G+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM+KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA++++GKVVFVPW E
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVE 216          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.362e-82
Identity = 148/204 (72.55%), Postives = 167/204 (81.86%), Query Frame = 1
Query:  103 KGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTE 699
            K G+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM+KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA++++GKVVFVPW E
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVE 218          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.842e-80
Identity = 145/198 (73.23%), Postives = 162/198 (81.82%), Query Frame = 1
Query:  118 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTE 699
            C SRA L KP +     +  +      I CQA +SIPADRVPDM KRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA+V++GKV+FVPW E
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVE 213          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.785e-77
Identity = 138/195 (70.77%), Postives = 155/195 (79.49%), Query Frame = 1
Query:  118 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTE 699
            C +RA  L KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA+V++GKVVFVPW E
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVE 210          
BLAST of CK937296 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.768e-60
Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 1
Query:  226 VPDMDKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTE 699
            VPD+ +RQ MNLL  G ++      L P   +F PP  G  GGG TAKDA+GND+I + +L +H  GDRTL +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHANV +N KVVF  WTE
Sbjct:    9 VPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTE 167          
The following BLAST results are available for this feature:
BLAST of CK937296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_ARATH1.903e-8774.26Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA2.485e-8775.62Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL4.686e-8675.12Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG1.276e-8372.50Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC4.849e-8373.04Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC1.843e-8272.55Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU5.362e-8272.55Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ3.842e-8073.23Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT1.785e-7770.77Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN5.768e-6066.67Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_G11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937296 ID=CK937296; Name=CK937296; organism=Citrus sinensis; type=EST; length=700bp
GGGGTGAAATACAANNNNNTACTCGGTTGCCTCCAATAATTCTCCACAAT
GGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCAA
GCAAGGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGCA
AGGACCCAAATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCA
GGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGACAAGAGGCAGC
TCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATG
TTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGG
TGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTG
ATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTG
AAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATC
ATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGA
ATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAAT
AACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGC
TCATGCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAA
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