CX675287

Overview
NameCX675287
Unique NameCX675287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675287_ssr841 microsatellite CX675287_ssr841:841..852. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:48..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.201e-74
Identity = 123/161 (76.40%), Postives = 144/161 (89.44%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            HKL+R+WTFW+D  +KPK GAAWG+S++K YTFDTVEEFWCLY+QIF+PS+L  +ADFHLFK G+EPKWEDPECANGGKW+V S+RK NLDTMWLET MALIGEQFDE  EICGVVASVRQRQDKL+LWTKTA+NEA Q+ IGKKWKE++D  D++ YSFH
Sbjct:   33 HKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFH 193          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 7.285e-72
Identity = 119/161 (73.91%), Postives = 140/161 (86.96%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            HKL R+W FW+D  SKPK GAAWG+S+RK YTFDTVEEFW LY+QIF+PS++ +NADFHLFK G+EPKWEDPECANGGKW+V  +RK  L+ MWLET+MALIGEQFDE +EICGVVASVRQR DKLALWT+TA+NEA Q+ IGKKWKEI+D  D++ YSFH
Sbjct:   30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFH 190          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.768e-71
Identity = 115/161 (71.43%), Postives = 140/161 (86.96%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            HKL R+WTFW+D  +K K GAAWG+S++K YTFDTVEEFW +Y+QIF+PS+L  NADFHLFK G+EPKWEDPECANGGKW+V  NRKA  +TMWLET+MALIGEQFDE ++ICG+VASVR R DKLALWT+TA+NEA Q+ IGKKWK+++D  D+ITY+FH
Sbjct:   40 HKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASVRARGDKLALWTRTASNEAVQVNIGKKWKDVIDYNDKITYTFH 200          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 5.403e-67
Identity = 121/169 (71.60%), Postives = 142/169 (84.02%), Query Frame = -2
Query:  335 QSQLHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWS--VTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVR--QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 829
            + Q HKLERKW+FWFDN SK  +GAAWG+S+RK YTFDTVE+FW L+E IF+ S+L  NA+ HLFK G+EPKWEDPECANGGKW+  VT+NRK  LD  WLET+MALIGEQFDE DEICGVVASVR   +QDKL+LWT+T +NEA  MGIGKKWKEILDVTD+IT++ H
Sbjct:   22 EKQPHKLERKWSFWFDNQSK--KGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNH 188          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.744e-55
Identity = 98/167 (58.68%), Postives = 119/167 (71.26%), Query Frame = -2
Query:  335 PPQSQLHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 835
            P     H LE  WTFWFDN     + AAWGSS+R ++TF TVEEFW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R    DT WL T++A+IGEQFD  DEICG V SVR +Q+++A+WTK AANEAAQ+ IGK+WKE+LD  D I +  H
Sbjct:   37 PSPPATHPLEHSWTFWFDNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGR-GKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSIGKQWKELLDYKDSIGFIVH 202          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.803e-54
Identity = 99/170 (58.24%), Postives = 120/170 (70.59%), Query Frame = -2
Query:  335 PPQSQL---HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 835
            PPQ+     H LE  WTFWFDN     + A WGSS+R ++TF TVE+FW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+ +  R    DTMWL T++A+IGEQFD  DEICG V SVR +Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H
Sbjct:   43 PPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGR-GKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 211          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.526e-53
Identity = 94/161 (58.39%), Postives = 116/161 (72.05%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            H LE  WTFWFDN     +  AWGS++  ++TF TVE+FW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R    DT WL T++A+IGEQFD  DEICG V SVRQ+Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H
Sbjct:   40 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGR-GKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 199          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.062e-50
Identity = 89/161 (55.28%), Postives = 117/161 (72.67%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            H LE  WTFWFDN +   +  +WGSS+R V+TF TVEEFW LY  +  PS+L   ADF+ FK  IEPKWEDP CANGGKW++T  ++ + D  WL T++ALIGEQFD  DEICG V ++R +Q+++++WTK A+NEAAQ+ IGK+WKE LD  + I +  H
Sbjct:   60 HPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKS-DKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIH 219          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.930e-48
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            H  +  WTFWFDN S       WGSS+R +YTF T+EEFW LY  I  P++    AD + FK  IEPKWEDP CANGGKWS+    KA L+  WL T++AL+GEQFD+ DEICG V + R R D+++LWTK AANE AQ+ IGK+WKE+L   + I +  H
Sbjct:   65 HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMF-PKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVH 224          
BLAST of CX675287 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 4.301e-48
Identity = 86/161 (53.42%), Postives = 110/161 (68.32%), Query Frame = -2
Query:  335 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 817
            H  +  WTFWFDN S       WGSS+R +YTF T+EEFW LY  I  P++    +D + FK  IEPKWEDP CANGGKW++   R A L++ WL T++AL+GEQFD+ DEICG V + R R D+++LWTK AANE AQ+ IGK+WKE+L   D I +  H
Sbjct:   65 HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFKDKIEPKWEDPICANGGKWTMFFPR-ATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRGDRISLWTKKAANEEAQLSIGKQWKELLGYNDTIGFIVH 224          
The following BLAST results are available for this feature:
BLAST of CX675287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E2_WHEAT1.201e-7476.40Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E2_ORYSJ7.285e-7273.91Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E2_MAIZE2.768e-7171.43Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4E2_ARATH5.403e-6771.60Eukaryotic translation initiation factor 4E-2 OS=A... [more]
IF4E1_MAIZE4.744e-5558.68Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E1_ORYSJ1.803e-5458.24Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E1_WHEAT1.526e-5358.39Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E1_ARATH2.062e-5055.28Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E4_ARATH1.930e-4854.04Putative eukaryotic translation initiation factor ... [more]
IF4E5_ARATH4.301e-4853.42Eukaryotic translation initiation factor 4E-5 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61C04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61C04-F7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675287 ID=CX675287; Name=CX675287; organism=Citrus sinensis; type=EST; length=878bp
TTTTTTTTTTGAACAATTCAAGAGAGTTCTATTTGAACAAAACAGAGTAG
TACAAAACTACAAACAAACTGGGTCACAAAAAAATTTCTCAATATCTCCT
ATATCAAAACAATAGAAATCATTGTATTACATGTCTAAAGGCATATGGCA
ACACATTTGAAGTATCTAATGTTTAATTGTTTATGGTAAATAGAGCACAA
AAAATACAGAAACAGATTCATCGGTCTAAGCCACAATTTGGCAACTACAA
GTACAGGCTACTGCGACAAAATGGTCACTTTTGAGTTCACACACTGTATC
GACTTTTCACTGATCGATCCCTTCTAGAGTCATCGTGGAAGCTGTAAGTG
ATCCTATCAGTGACATCAAGGATCTCCTTCCACTTCTTTCCAATGCCCAT
CTGAGCAGCTTCATTTGCTGCTGTCTTGGTCCATAAGGCAAGTTTGTCCT
GCCTCTGGCGTACACTAGCAACAACTCCACAAATCTCATCCACCTCATCA
AATTGCTCTCCAATCAGGGCCATCATTGTTTCAAGCCACATGGTATCAAG
GTTAGCCTTCCTGTTGCTAGTGACCGACCACTTTCCTCCATTTGCACACT
CAGGATCTTCCCACTTTGGTTCTATCCCAGTTTTGAACAAATGGAAATCC
GCATTCATTGGCAACCGGCTTGGCTTGAATATCTGTTCATACAAACACCA
AAATTCTTCGACAGTGTCGAAGGTGTAGACTTTGCGCATAGAGGAGCCCC
ACGCGGCGCCCTGTTTGGGCTTTGATATGTTGTCGAACCAAAACGTCCAT
TTTCTCTCGAGCTTGTGCAGCTGTGATTGCGGCGGCACCTCCGCCGCCGC
CGTCGCGCTTGCCTCCTCACTTGTTCCT
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