CX675280

Overview
NameCX675280
Unique NameCX675280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675280_ssr713 microsatellite CX675280_ssr713:713..726. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5488 contig Csv1_Contig5488:1..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.041e-49
Identity = 90/104 (86.54%), Postives = 99/104 (95.19%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 614
            RRVPCRK+GGIRFTING RYFNLVL+TNVAGAGDI+R +VKGSRT WMS+SRNWGQNWQSNAVLVGQ+LSFRV  SDRR+STSWN+VP+NWQFGQTFVGKNFRV
Sbjct:  154 RRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFRV 257          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.956e-49
Identity = 89/104 (85.58%), Postives = 100/104 (96.15%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 614
            RRVPCRK+GGIRFTINGFRYFNLVLVTNVAGAG+I+R+ VKG+ T+WM+MSRNWGQNWQSN+VLVGQSLSFRV +SDRRSSTSWNI PANW+FGQTF+GKNFRV
Sbjct:  154 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.712e-48
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 614
            RRV CRK GGIRFTING RYFNLVL+TNVAGAGDI R +VKGS+T WMS++RNWGQNWQSNAVLVGQSLSFRV +SDRR+STSWNI P+NWQFGQTFVGKNFRV
Sbjct:  157 RRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.273e-47
Identity = 89/104 (85.58%), Postives = 95/104 (91.35%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 614
            RRVPCRK GGIRFT+NGFRYFNLVLVTNVAGAGDI  V+VKGS+T W+ MSRNWGQNWQSNAVL+GQSLSFRV ASDRRSSTSWN+ PA WQFGQTF GKNFRV
Sbjct:  159 RRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFRV 262          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.249e-47
Identity = 85/104 (81.73%), Postives = 93/104 (89.42%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 614
            RRVPCRKKGG+RFTINGFRYFNLVL+TNVAGAGDI+R +VKG+ T WM MSRNWGQNWQSN+VLVGQ+LSFRV  SDRR+STSWN  PA W FGQTF GKNFRV
Sbjct:  161 RRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFRV 264          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.838e-46
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 614
            RR+PCRKKGGIRFTINGF+YFNLVLVTNVAGAGD+++V+VKGS T W+ +SRNWGQNWQSNA+LVGQSLSFRVK SD RSSTS NI P+NWQFGQT+ GKNFRV
Sbjct:  155 RRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFRV 258          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.474e-37
Identity = 74/102 (72.55%), Postives = 81/102 (79.41%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 608
            RRVPC KKGGIRFTING  YFNLVLVTNVAG GD+  V++KGS T W  MSRNWGQNWQSN+ L GQSLSF+V  SD R+ TS N+VPA WQFGQTF G  F
Sbjct:  150 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.474e-37
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 611
            RRVPC ++GGIRFTING  YFNLVLVTNV GAGD+  V VKGSRT W  MSRNWGQNWQSN +L GQ+LSF+V ASD R+  S NI PA+W FGQTF G+ FR
Sbjct:  151 RRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.474e-37
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 611
            RRV CR+KGGIRFTING  YFNLVL+TNVAGAGD++ V++KG+ T W SMSRNWGQNWQSNA L GQ+LSF+V  SD R+  S N  P NW FGQT+ GK FR
Sbjct:  150 RRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of CX675280 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 73/102 (71.57%), Postives = 81/102 (79.41%), Query Frame = 3
Query:  303 RRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTAWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 608
            RRVPC KKGG+RFT+NG  YFNLVLVTNVAGAGD+  V++KGSRT W  MSRNWGQNWQSNA L GQSLSF+V ASD R+ TS N+    WQFGQTF G  F
Sbjct:  145 RRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
The following BLAST results are available for this feature:
BLAST of CX675280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA4_ARATH1.041e-4986.54Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA6_ARATH3.956e-4985.58Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP16_ARATH5.712e-4884.62Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA3_ARATH1.273e-4785.58Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ8.249e-4781.73Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH1.838e-4681.73Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA2_ORYSJ3.474e-3772.55Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP15_ARATH3.474e-3770.87Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP14_ARATH3.474e-3768.93Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ORYSJ5.925e-3771.57Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61B09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61B09-D17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675280 ID=CX675280; Name=CX675280; organism=Citrus sinensis; type=EST; length=889bp
TAGGTGCGAAAATAACTAAAATCGTCCGACGTCAAAGTATTTTATTGTAC
GTCCCGATCAGCTTGACTTGGTGAATAAATTAGTGGGAAGATCTGAGCCG
TTGGATGATTGTATATTCTTCACGCAGAGAAAAATATTCAAAATGACATT
ATTTTCTATGTAGCAATTTCGTCAAATACGCCACACGGTCTCCGAAGACA
TGAGAGTCTTCTTCTCGATGATGTCGTGTCAGTCCAAGAACCACGCTCCT
CGTTTGACGAACCCTTTTTACCGAATTGTCCTTGACGTGCTGTTGTTATT
TACGCAGGGTACCATGCCGCAAGAAGGGAGGAATCAGGTTCACAATAAAC
GGGTTCCGCTACTTCAACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGG
GGATATCCTGAGGGTGAACGTGAAAGGGTCAAGGACTGCCTGGATGAGCA
TGAGCCGTAACTGGGGCCAAAACTGGCAGTCAAACGCAGTGCTGGTAGGG
CAGTCACTTTCGTTTAGGGTGAAAGCGAGTGACCGACGCAGCTCCACCTC
GTGGAACATTGTGCCAGCTAACTGGCAGTTTGGTCAAACATTCGTTGGAA
AGAATTTCAGAGTCTAAGTTAACGGAGGACTTTAAAAAATAGAAAAAAAA
ATTAATCAATCTTTCCCGCCATGGCCATTTTCCAATTTTACCCTTTCTTA
TTATAACTTTAAATATATATATATATTTTTTTCTTTTTTGCTTTGACTTG
TGGGTGATGGGTCCTGTTGGAGAACGTGAAAGTTGAAGAGTAAAATCGGG
AGGGTAATTGGTTGGAAAAGAGTGAAACTTTATTATCTTTGTCATTTTTT
TTGGGTTTCTTTTTGATTGGTGGGGTAATAAATGGCTTT
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