CK937246

Overview
NameCK937246
Unique NameCK937246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937246 vs. ExPASy Swiss-Prot
Match: DNAJ8_ARATH (Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.816e-38
Identity = 79/128 (61.72%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  318 RVKVICXXXXXXXXXXVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMCQPYDGGIDEPFRGMNDPDWDLWEEWMGWEGAGIRDYSSHVNPY 701
            R KV+C          VMDPYKTL+I+  +SE EVKKAFRQLA +YHPDVCRG+NCGVQF  INEAYD+V+   + +    E   +P+D   DE   GMNDPD D WEEWMGWEGAG RDYSSHVNPY
Sbjct:   42 RSKVVCSSSSS-----VMDPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQMEGTEEF-EPFD-VYDEGLNGMNDPDCDTWEEWMGWEGAGTRDYSSHVNPY 162
The following BLAST results are available for this feature:
BLAST of CK937246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ8_ARATH1.816e-3861.72Chaperone protein dnaJ 8, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004512_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937246 ID=CK937246; Name=CK937246; organism=Citrus sinensis; type=EST; length=747bp
GGNGGGTGGCTCTCCCTAATCTCTATCCATTANNNATTATTAGCCAATCT
AAATTCATCGTCATTGAATCTCATCTATCCAAAAAAAAAAAAAAAGAAGA
AGAAAATCAAATTTTGCTTGTGGGATCTTTTGCTTTCAACGTATAAAGAA
AGAAAGAAAGAAAGAAAGATTAAAGCTTGTTGCTCGCGGCTTTGTGAGTT
TTTGATTTGAGAAAAATGGCAAGTGTTGCAGGGACGATCGGAGCAAATGG
GTCGTCGGGTTCATCATCTTCATGGACTCAGCTGAAGAATATGAAGAAGA
AAAAAATGATGATGGGTAGAGTCAAGGTCATTTGCTCTGCTTCTTATTCA
TCTTCATCGTCTTCTGTTATGGATCCTTACAAGACTCTCAGGATTCAGCG
TGGTGCCTCTGAATCTGAGGTCAAGAAAGCCTTCAGGCAGCTTGCTTTGC
AGTATCATCCGGATGTATGCAGAGGAAACAATTGTGGAGTTCAGTTTCAT
CTGATTAATGAAGCCTATGATATGGTGATGAATAATTTCAGGGAGGAACC
CAATGAACCGGAGATTATGTGCCAGCCGTACGATGGAGGAATTGATGAGC
CGTTTAGGGGAATGAACGACCCAGATTGGGATTTATGGGAGGAGTGGATG
GGGTGGGAAGGTGCTGGAATTAGGGATTACTCATCGCACGTTAATCCTTA
CATCTAAAACTTTGTAATTAAATAAAAAAAAAAAAAAAAAAAAAAAA
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