CX675278

Overview
NameCX675278
Unique NameCX675278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig788 contig Csv1_Contig788:263..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.099e-55
Identity = 102/135 (75.56%), Postives = 113/135 (83.70%), Query Frame = -2
Query:  233 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLFAALVGPRFERWSAYVADGKIKAFNVEEAPLHMKVFGGDVLLGQI 637
            + DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++ID FKAKG DS+ICV+VNDP+ +NGWAEKL  KD  EFYG FDG FHKSL L KDL AAL+GPR ERWSAYV DGK+KA NVEEAP   KV G +V+LGQI
Sbjct:   67 LSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVTGAEVILGQI 201          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.169e-54
Identity = 102/135 (75.56%), Postives = 110/135 (81.48%), Query Frame = -2
Query:  233 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLFAALVGPRFERWSAYVADGKIKAFNVEEAPLHMKVFGGDVLLGQI 637
            +KDIF GKKVVIFGLPGAYTGVCS  HVPSYKNNID  KAKG DS+ICV+VNDPY +NGWAEKLQ KD  EFYG FDGSFHKSLDL  DL AAL+G R  RWSA+V DGKIKAFNVE AP   KV G +V+L QI
Sbjct:   64 LKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVEVAPSDFKVSGAEVILDQI 198          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = -2
Query:  284 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLFAALVGPRFERWSAYVADGKIKAFNVEE 619
            GKKVV+FG+PGA+T  CSNQHVP + N  +  KAKG D ++ V+VNDP+VM  WA+        +F     G++ K+L L  DL    +G R  R++    + K+   N+EE
Sbjct:   35 GKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEE 146          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: MALF2_MALFU (Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = -2
Query:  284 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLFAALVGPRFERWSAYVADGKIKAFNVEE 634
            +D +KGKKVVI  +PGAYT +C  QH+P     +D  KAKG D++  +A NDP+VM  W      KD   F    D +F K+L    DL A   G R  R++  + D KI  F  +E
Sbjct:   43 RDEWKGKKVVIVSIPGAYTPICHQQHIPPLVKRVDELKAKGVDAVYVIASNDPFVMAAWGNFNNAKDKVVFATDIDLAFSKALGATIDLSAKHFGERTARYALIIDDNKIVDFASDE 159          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = -2
Query:  284 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLF--AALVGPRFERWSAYVADGKIKAFNVEE 637
            ++D+  GKKVV+F +PGA+T  C+ +HVP +       +AKG D++ CV+VND +VM  W E L   D        +G   +++ +  DL    A +G R  R++    DG +K  N+EE
Sbjct:   97 VRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEE 216          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  287 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLFAALVGPRFERWSAYVADGKIKAFNVE 637
            +  I  GKKV++FG+PGA+T  CS  HVP +    +  K+KG D +IC +VNDP+VM  W +  Q     +F     G +   L L  DL    +G R  R++  + + K+   NVE
Sbjct:   29 VHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVE 145          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  287 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKDLFAALVGPRFERWSAYVADGKIKAFNVE 637
            +  +  GKKV++FG+PGA+T  CS +HVP +    +  K+KG D +IC +VNDP+VM  W +        +F     G +   L L  DL    +G R  R++  + D K+   NVE
Sbjct:   29 VHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLKVTVANVE 145          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRDX5_PAPHA (Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = -2
Query:  287 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKD--LFAALVGPRFERWSAYVADGKIKAFNVE 637
            + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG   L C++VND +V   W    + +          G+F K  DL  D  L +     R +R+S  V DG +KA NVE
Sbjct:   79 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKVEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVE 197          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRDX5_CERAE (Peroxiredoxin-5, mitochondrial OS=Cercopithecus aethiops GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = -2
Query:  287 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKD--LFAALVGPRFERWSAYVADGKIKAFNVE 637
            + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG   L C++VND +V   W    + +          G+F K  DL  D  L +     R +R+S  V DG +KA NVE
Sbjct:   79 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVE 197          
BLAST of CX675278 vs. ExPASy Swiss-Prot
Match: PRDX5_BOVIN (Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PRDX5 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = -2
Query:  287 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDNFKAKGTDSLICVAVNDPYVMNGWAEKLQTKDVFEFYGVFDGSFHKSLDLGKD--LFAALVGPRFERWSAYVADGKIKAFNVE 637
            + ++FKGKK V+FGLPGA+T  CS  H+P +    D  KAKG   + C+ VND +V   WA   + +          G+F K  DL  D  L       R +R+S  + DG +K+ NVE
Sbjct:   83 LAELFKGKKGVLFGLPGAFTPGCSKTHLPGFVEQADALKAKGIQVVACLTVNDVFVTEEWARAHKAEGKVRLLADPSGTFGKETDLLLDDSLLFLFGNHRLKRFSMVIEDGIVKSLNVE 201          
The following BLAST results are available for this feature:
BLAST of CX675278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PRX2F_ARATH2.099e-5575.56Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]
PRX2F_ORYSJ5.169e-5475.56Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su... [more]
PRX2C_ORYSJ3.165e-1941.96Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
MALF2_MALFU2.052e-1841.03Putative peroxiredoxin OS=Malassezia furfur PE=1 S... [more]
PR2E1_ORYSJ8.620e-1735.83Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PRX2D_ARATH1.920e-1636.75Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2B_ARATH1.920e-1635.90Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRDX5_PAPHA7.297e-1637.82Peroxiredoxin-5, mitochondrial OS=Papio hamadryas ... [more]
PRDX5_CERAE7.297e-1637.82Peroxiredoxin-5, mitochondrial OS=Cercopithecus ae... [more]
PRDX5_BOVIN7.297e-1637.82Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61B08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61B08-D15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675278 ID=CX675278; Name=CX675278; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTCTCTCAAACTGCTTTTACCGTAAACTTATTCGC
AATGTAGGAACAACCTTATTTTTAGAGGGTTAACAAAGTAAGAAAGAAAA
ACACTAAAACGTAGATTGGAGCAACATTTCCAAGTTATTATTCGCGGACC
TTCTCTGCTAAGAGTAATTGAAAAACATGCTATACACATACAAAAGCTTG
AATCGATGGCAAACGATACTGAAACATATTTAAATCTGTCCCAAAAGGAC
ATCGCCACCAAAAACCTTCATGTGCAATGGTGCTTCCTCTACATTAAAAG
CCTTAATCTTCCCATCCGCTACATATGCTGACCACCTTTCAAAGCGAGGA
CCAACCAAAGCAGCAAAAAGATCTTTTCCCAAGTCCAAGCTCTTGTGGAA
GCTTCCATCAAAGACACCATAAAATTCAAAAACATCTTTGGTTTGAAGTT
TCTCGGCCCAGCCATTCATAACGTATGGATCATTAACGGCCACACAAATT
AAAGAATCAGTCCCTTTAGCCTTGAAATTGTCAATGTTATTCTTGTAACT
AGGGACATGCTGATTTGAACAAACTCCCGTATATGCACCAGGGAGCCCGA
AAATGACTACTTTCTTTCCCTTGAAAATGTCTTTAATA
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