CX675274

Overview
NameCX675274
Unique NameCX675274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:27..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 148/202 (73.27%), Postives = 160/202 (79.21%), Query Frame = -2
Query:  231 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPGEKAVPAPQPAEGAKKA 836
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+             +KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKA+KAREKTLSDQFEAKRAKN               A+GPG    P   PA  A  A
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAATPA 202          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.258e-76
Identity = 151/208 (72.60%), Postives = 160/208 (76.92%), Query Frame = -2
Query:  225 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGP--GEKAVP--APQPAEGAKKAKK 836
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK KA+KAREKTL+DQFEAKR KN               AQGP  GE   P  APQ  E  KK  K
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKKSK 208          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 281.952 bits (720), Expect = 3.106e-75
Identity = 151/208 (72.60%), Postives = 165/208 (79.33%), Query Frame = -2
Query:  225 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPG---EKAVPAPQPAE-GAKKAKK 836
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+             +KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKA+KAREKTLSDQFEAKRAKN               A+GPG     A P  Q AE  AKK+KK
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEVPAKKSKK 208          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.549e-58
Identity = 109/165 (66.06%), Postives = 130/165 (78.79%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+             +KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK KA+K R K L+DQ EA+R K
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.194e-56
Identity = 107/165 (64.85%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.194e-56
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.194e-56
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.194e-56
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 7.194e-56
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CX675274 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.194e-56
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  342 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAKKAREKTLSDQFEAKRAK 836
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
The following BLAST results are available for this feature:
BLAST of CX675274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL191_ARATH7.393e-7773.2760S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH6.258e-7672.6060S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL193_ARATH3.106e-7572.6060S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME1.549e-5866.0660S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA7.194e-5664.8560S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT7.194e-5664.2460S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB7.194e-5664.2460S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE7.194e-5664.2460S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA7.194e-5664.2460S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN7.194e-5664.2460S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61B05-D9-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675274 ID=CX675274; Name=CX675274; organism=Citrus sinensis; type=EST; length=870bp
TTTTTTTTTTTTTTTTAATGAACATAATACTCATCATTCAACATAACAAG
AAACTACAAACGGTTCATATGGTTCCAAAATTCAAGGCTTTATAAGTAAA
TAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACAAACTCCTAC
AAAGAAACCAGAACCAACATTAACATATATAAGTTATCAATCTTCAGTCT
CCATCATCGATGTATCAGCGATCACTTCTTAGCTTTCTTAGCTCCCTCAG
CTGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGTGCTAGTCGC
TCTTCTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTTCTTGGCGCG
CTTAGCCTCAAACTGGTCAGAAAGAGTCTTCTCTCTTGCCTTTTTAGCCT
TTGACTTGTGGATACTCTCCATGAGGACACGCTTGTTCTTAAATACATTA
CCCTTGACCTTCATGTACATGTCATGGTACATGTGCTTGTCAATTTTCTT
CGACTCACGGTATTTGCGGAGCAACCGCCTGAGCACACGCATCCTTCTCA
TCCAGAGGATTTTGGTGGGAAGCCTCGCCTCCCTAGTACCCTTTCTCTTA
CCATATCCAGAGTGACGGCCCTTCCTCTTGGCTTCCTTCATTCTGCGAGC
GCGAGAACGGGAGTGGATCTTTGTTGGCTTCCTGATGATGAAACCATCCT
TCACCAATTTCCTAATGTTCTGCCTGGAGTTGGCCATGGAGATTTCGTTG
ACCTCATTAGGGTCAAGCCAGACCTTGCCACGTCCGCACTTGAGGACGCT
AGCGGAGAGCCGCTTCTGTAACTTCAACGACACCATTTTCCCTTCTCTTC
TCTCCCCCTCTGTCTCTCGC
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