CK937170

Overview
NameCK937170
Unique NameCK937170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: YGL4_SCHPO (Uncharacterized protein C216.04c OS=Schizosaccharomyces pombe GN=SPBC216.04c PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 65/126 (51.59%), Postives = 87/126 (69.05%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYA-DGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            ++K+E+EW+  L PE++RI+RQKGTE  G G +   +   G + CA C   LYK+ TKF+S CGWPAF++ LPG + R  D      R E  CA CGGH+GH+FKGEG+  PTDERHC+NS S++F
Sbjct:    5 LEKSEDEWKKELGPEKYRIMRQKGTEHPGAGRFTHQFPKQGVFVCAACKELLYKASTKFESHCGWPAFFDNLPGKVKRIEDNSYGMHRVEAVCANCGGHLGHIFKGEGYSNPTDERHCINSASLEF 130          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_LEIXX (Peptide methionine sulfoxide reductase msrB OS=Leifsonia xyli subsp. xyli GN=msrB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDP--DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            + K++EEWR  L+PEQ+ +LRQ GTE   TGE       G Y CA CG  L++S TKFDSGCGWP+FYE + P A+    D      RTE+ CA CG H+GHVF  +GF+TPT +R+C+NS+S+ F P D
Sbjct:   10 IAKSDEEWRRELTPEQYGVLRQAGTEQPWTGELLDESRAGVYACAACGAELFRSGTKFDSGCGWPSFYESVRPEAVELLEDTRLGITRTEVRCANCGSHLGHVFP-DGFRTPTGDRYCMNSISLDFQPED 138          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ACAM1 (Peptide methionine sulfoxide reductase msrB OS=Acaryochloris marina (strain MBIC 11017) GN=msrB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.424e-29
Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   32 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR-----RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 412
            + VQKTE+EW A L+PEQFR+ R  GTE   TGEY+ L A G Y C  CGT L+ S TKFDSG GWP+F+   P       +   R     RTE+ CA C  H+GHVF  +G K PT  R+C+NS ++KF+P
Sbjct:    2 EKVQKTEQEWEAQLTPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTGWPSFW--APADKTHVEEKTDRSLFMVRTEVLCAVCDAHLGHVF-NDGPK-PTGLRYCMNSAALKFVP 129          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_METTH (Peptide methionine sulfoxide reductase msrB OS=Methanobacterium thermoautotrophicum GN=msrB PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.100e-28
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   32 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG---AINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            + ++ +++EWR IL PE FR+ R+ GTEP  TG+Y+ L+ DG Y C  CGT L+ S TKFDSG GWP+FY+ +      +         R E+ CA C  H+GHVF  +    PT +R+C+NS ++KFIP D
Sbjct:   19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMNSAALKFIPRD 148          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_THIDA (Peptide methionine sulfoxide reductase msrB OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msrB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 2
Query:   44 KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            KT+ +WRA LSPEQ+RILR++GTE   TGEY   +A+G Y CA CG  L+ S  KFDSG GWP+FYE L   A+    D      RTE  C+ C  H+GHVF       PT  R+C+NS S+ F P D
Sbjct:    7 KTDAQWRAELSPEQYRILREQGTERAFTGEYWDHHANGEYRCAACGAPLFSSSAKFDSGTGWPSFYEALNAQAVRERTDTTHGMVRTEALCSRCNSHLGHVFPDG--PPPTGLRYCINSASLSFHPKD 132          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_LEPIN (Peptide methionine sulfoxide reductase msrB OS=Leptospira interrogans GN=msrB PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 61/126 (48.41%), Postives = 81/126 (64.29%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            V K++E+W+  L+PEQ+RILRQKGTE   TG   K    G Y CA CG  L+ S TK++SG GWP+FY+ +  G +++  D      RTEI C+ CGGH+GHVF       PT  R+C+NS S+KF
Sbjct:    6 VNKSDEDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWPSFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDG--PRPTGLRYCINSASLKF 129          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_LEPIC (Peptide methionine sulfoxide reductase msrB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=msrB PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 61/126 (48.41%), Postives = 81/126 (64.29%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            V K++E+W+  L+PEQ+RILRQKGTE   TG   K    G Y CA CG  L+ S TK++SG GWP+FY+ +  G +++  D      RTEI C+ CGGH+GHVF       PT  R+C+NS S+KF
Sbjct:    6 VNKSDEDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWPSFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDG--PRPTGLRYCINSASLKF 129          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_PSEU2 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   32 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 412
            D +QKT EEW+ +L PEQ+ + R KGTE   +G+Y+K+  DG Y+C  C   L+ S TKFDSGCGWP+FY  L  +     R       RTE+ CA C  H+GHVF       PT  R+C+NSV +  +P
Sbjct:    2 DKLQKTLEEWKQMLDPEQYNVCRLKGTERPFSGKYDKVKTDGIYHCICCDEPLFDSTTKFDSGCGWPSFYAPLENSAVIEVRDMSHGMIRTEVVCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_PSEFS (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas fluorescens (strain SBW25) GN=msrB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   32 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 412
            + +QKT +EW+A+L PEQ+ + R KGTE   +G+YN    DG Y+C  C   L+ S TKFDSGCGWP+FY  +  +     R       RTE+TCA C  H+GHVF       PT  R+C+NSV +  +P
Sbjct:    2 EKLQKTVDEWKAMLDPEQYNVCRLKGTERPFSGKYNATKTDGVYHCICCNAPLFDSTTKFDSGCGWPSFYAPIADSAMVEIRDVSHGMIRTEVTCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: YCD3_YEAST (Uncharacterized protein YCL033C OS=Saccharomyces cerevisiae GN=YCL033C PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.321e-27
Identity = 63/129 (48.84%), Postives = 75/129 (58.14%), Query Frame = 2
Query:   35 SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFK----TPTDERHCVNSVSI 400
            S +  + +W   L+P Q  +LR K TE   TG Y      G Y+CA C   LY S  KFD+ CGWPAFYE + PGAI    D      R EI CA CGGH+GHVF+GEG+K     P D RHCVNS S+
Sbjct:   35 SDESNDVKWNDALTPLQLMVLRDKATERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGHVFEGEGWKQLLNLPKDTRHCVNSASL 163          
The following BLAST results are available for this feature:
BLAST of CK937170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
YGL4_SCHPO1.773e-3551.59Uncharacterized protein C216.04c OS=Schizosaccharo... [more]
MSRB_LEIXX5.339e-3251.54Peptide methionine sulfoxide reductase msrB OS=Lei... [more]
MSRB_ACAM19.424e-2950.00Peptide methionine sulfoxide reductase msrB OS=Aca... [more]
MSRB_METTH2.100e-2844.70Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_THIDA4.677e-2850.00Peptide methionine sulfoxide reductase msrB OS=Thi... [more]
MSRB_LEPIN7.978e-2848.41Peptide methionine sulfoxide reductase msrB OS=Lep... [more]
MSRB_LEPIC7.978e-2848.41Peptide methionine sulfoxide reductase msrB OS=Lep... [more]
MSRB_PSEU21.777e-2745.38Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEFS1.777e-2744.62Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
YCD3_YEAST2.321e-2748.84Uncharacterized protein YCL033C OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_D12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937170 ID=CK937170; Name=CK937170; organism=Citrus sinensis; type=EST; length=627bp
GGGGGAAACAAACCCCATGACNNNAGCAGCAGATTCCGTTCAGAAAACCG
AGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCAGTTTAGGATTCTACGC
CAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGTACAACAAGTTGTATGC
GGATGGGTTTTACAACTGTGCTGGCTGTGGAACTGCGCTTTATAAGTCTG
TCACCAAATTCGATTCTGGATGTGGGTGGCCAGCTTTCTATGAAGGTCTT
CCTGGAGCCATAAATCGCTCCCCTGATCCTGATGGAAGGAGAACCGAGAT
AACTTGTGCTGCTTGCGGGGGTCACATGGGTCACGTCTTCAAAGGGGAGG
GATTCAAAACGCCTACAGATGAACGCCACTGTGTCAATAGTGTTTCAATT
AAGTTTATTCCAGGTGATGCTCCTGCTTCATCATGAAGAATGTAAGACTG
TCATGGGGTTGTTGAATAAGATTTGACTGTTTGTCACTTCTGCCAATTGT
TTTTGGCTTTAATGTCCTAGACATGGTGTTGTTTGTATAATTATGACGCG
GCCAATATTAGCCTATGCCATAGTATAAACCACTTTGTTTGGTTTGCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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