CK937166

Overview
NameCK937166
Unique NameCK937166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_ANAVT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.165e-34
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VEAMAQVGG+VM Q P + G    F FAGIDKVRFR+ V+ GD LVM + L+ + Q+RFG
Sbjct:   23 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQLPNLEGGL--FVFAGIDKVRFRRQVVPGDQLVMTVELLWIKQRRFG 141          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_ANASP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena sp. (strain PCC 7120) GN=fabZ PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.399e-34
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VEAMAQVGG+VM Q P + G    F FAGIDKVRFR+ V+ GD LVM + L+ + Q+RFG
Sbjct:   29 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQLPGLEGGL--FVFAGIDKVRFRRQVVPGDQLVMTVELLWIKQRRFG 147          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNY3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechocystis sp. (strain PCC 6803) GN=fabZ PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.797e-33
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGIDKVRFRKSVIAGDTLVMRMTL--VKLQK 522
            T   I +I D+LPHR+PF LVDR+I++ PG  AV +KNVTIN+ FFPGH PDRPIMPGVL+VE+MAQVGG+++ Q  + G R  FF FAGID VRFR+ V+ GD L+M + L   KLQ+
Sbjct:   22 TQFTIQEISDLLPHRYPFALVDRIIDFQPGKCAVGLKNVTINEPFFPGHIPDRPIMPGVLIVESMAQVGGVILTQ--LPGMRGKFFAFAGIDGVRFRRPVVPGDQLIMTVELQSFKLQR 138          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain JA-3-3Ab) GN=fabZ PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.797e-33
Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  172 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            P V   +QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VEAMAQ+GG+V+ + P+V G      FAGID VRFR+ V+ GD L++   L+ + QKR G
Sbjct:   23 PPVFTTDQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQLGGIVLTKLPDVAGRLA--LFAGIDGVRFRRPVLPGDQLLLSANLLTIRQKRIG 142          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. GN=fabZ PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.330e-32
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 1
Query:  172 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKR 525
            P V    QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VEAMAQ+GG+V+ + P+V G      FAGID VRFR+ V+ GD L++   L+ +++R
Sbjct:   23 PPVFTTEQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQIGGIVLTKLPDVAGRLA--LFAGIDGVRFRRPVLPGDQLLLSADLLTIRQR 139          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNSC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9605) GN=fabZ PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.268e-32
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            V+   QI  +LPHR+PF LVDRVI ++PGVSA AIKNVT+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD LV+R  L+ L +KRFG
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAHDPGVSATAIKNVTMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLVIRCELLSLKRKRFG 127          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_MICAN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.268e-32
Identity = 65/116 (56.03%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGIDKVRFRKSVIAGDTLVMRMTLVKLQ 519
            T   + +IR +LPHR+PF LVDR+I+Y PG  AV +KNVTIN+ FFPGH P+RP+MPGVL+VE+MAQVGG+++ Q  + G +  FF FAGIDK RFR+ V+ GD L+M + L+  +
Sbjct:   17 TTFTVEEIRQLLPHRYPFALVDRIIDYVPGQKAVGLKNVTINEPFFPGHIPNRPLMPGVLIVESMAQVGGVILTQ--LPGMKGKFFAFAGIDKTRFRRPVVPGDQLIMTVELLSFK 130          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9902) GN=fabZ PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.869e-32
Identity = 71/120 (59.17%), Postives = 92/120 (76.67%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            V+   QI  +LPHR+PF LVDRVI Y PGVSA AIKN+T+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD L+++  L+ L +KRFG
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAYEPGVSATAIKNITMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVAQIPDL--PKGLFVFAGIDGVRFRRPVVPGDQLIIQCELLSLKRKRFG 127          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_THEEB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.126e-31
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRM-TLVKLQKRFG 531
            TV+ + +++ +LPHR+PFLLVDR+I+Y P   AV +KNVTIN+ FF GHFP RPIMPGVL+VEA+AQVGG+V++Q      + +  FAGIDKVRFR+ V+ GD L++R   LV  Q+R G
Sbjct:   11 TVLTVTELQQLLPHRYPFLLVDRIIDYVPEKYAVGLKNVTINEPFFQGHFPGRPIMPGVLIVEALAQVGGVVLMQMNWAKDKLS-VFAGIDKVRFRRPVVPGDQLILRAELLVVKQQRIG 129          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_PROMA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus GN=fabZ PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.126e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  172 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQK-RFG 531
            P V+   +I  +LPHR+PF LVDRV+EY PG SA  IKNVTIN+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD L++   L+ +++ RFG
Sbjct:    8 PVVLTNEEIMGLLPHRYPFALVDRVVEYEPGKSATGIKNVTINEPHFQGHFPGRPLMPGVLIVEAMAQVGGLIVKQIPDL--PKGLFVFAGIDSVRFRRPVVPGDQLLINCELISIKRQRFG 127          
The following BLAST results are available for this feature:
BLAST of CK937166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_ANAVT3.165e-3461.16(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANASP5.399e-3461.16(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNY37.797e-3359.66(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJA7.797e-3359.02(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJB1.330e-3257.98(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNSC2.268e-3260.83(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MICAN2.268e-3256.03(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS93.869e-3259.17(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEEB1.126e-3156.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMA1.126e-3156.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_D08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937166 ID=CK937166; Name=CK937166; organism=Citrus sinensis; type=EST; length=537bp
GATACAAANNNNNNNNCCCACAACNNNNNNNNCATCCAATTTGACAAGAA
GAAGAATCAACAACAACAGCGGCACCAACGACATGCTCGTTTCACCACAT
TTTGTTCTTTGGACGCTGAACCCAAAGATCCCATCGAAGATAAACCCATC
GAACTTCGGTACCAGGCATTTCCTACAGTGATGGACATTAACCAGATTCG
TGACATTTTGCCACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTG
AATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAAT
GATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGCCCGGTGT
TCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAAC
CAGAAGTGGGAGGCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAA
GTAAGATTCAGGAAATCAGTGATTGCAGGTGACACTTTGGTCATGAGAAT
GACACTTGTCAAGCTACAGAAACGCTTCGGAATAGCA
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