CK937161

Overview
NameCK937161
Unique NameCK937161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 4.587e-97
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGG LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241

HSP 2 Score: 62.003 bits (149), Expect = 4.587e-97
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   60 LGPFSGEAPSYLTGEFPGDYGWDTAGL 86
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 5.984e-97
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGG LGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct:   94 SADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 248

HSP 2 Score: 65.0846 bits (157), Expect = 5.984e-97
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGEPPSYLTGEFPGDYGWDTAGL
Sbjct:   67 LGPFSGEPPSYLTGEFPGDYGWDTAGL 93
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.019e-96
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGG LGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241

HSP 2 Score: 62.003 bits (149), Expect = 1.019e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   60 LGPFSGESPSYLTGEFPGDYGWDTAGL 86
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 1.329e-96
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGG LGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241

HSP 2 Score: 62.003 bits (149), Expect = 1.329e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   60 LGPFSGESPSYLTGEFPGDYGWDTAGL 86
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 2.951e-96
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGG LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   85 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239

HSP 2 Score: 62.003 bits (149), Expect = 2.951e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   58 LGPFSGESPSYLTGEFPGDYGWDTAGL 84
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 2.951e-96
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGG LGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   75 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 229

HSP 2 Score: 65.0846 bits (157), Expect = 2.951e-96
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGEPPSYLTGEFPGDYGWDTAGL
Sbjct:   48 LGPFSGEPPSYLTGEFPGDYGWDTAGL 74
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 3.849e-96
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGG LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241

HSP 2 Score: 62.003 bits (149), Expect = 3.849e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   60 LGPFSGESPSYLTGEFPGDYGWDTAGL 86
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 3.850e-96
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGG LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   86 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

HSP 2 Score: 62.003 bits (149), Expect = 3.850e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   59 LGPFSGESPSYLTGEFPGDYGWDTAGL 85
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 5.022e-96
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGG LGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   86 SADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

HSP 2 Score: 62.003 bits (149), Expect = 5.022e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   59 LGPFSGEAPSYLTGEFPGDYGWDTAGL 85
[Close]
BLAST of CK937161 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 5.022e-96
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 3 
Query:   81 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGLLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 545
            SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGG LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct:   85 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239

HSP 2 Score: 62.003 bits (149), Expect = 5.022e-96
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LGPFSGEPPSYLTGEFPGDYGWDTAGL 81
            LGPFSGE PSYLTGEFPGDYGWDTAGL
Sbjct:   58 LGPFSGESPSYLTGEFPGDYGWDTAGL 84
The following BLAST results are available for this feature:
BLAST of CK937161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB27_TOBAC4.587e-9796.77Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2B_PINSY5.984e-9795.48Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2G_SOLLC1.019e-9697.42Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_SPIOL1.329e-9696.77Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_SOLLC2.951e-9696.77Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_CUCSA2.951e-9695.48Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_TOBAC3.849e-9696.13Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC3.850e-9696.13Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_PETSP5.022e-9696.13Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC5.022e-9695.48Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_E04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937161 ID=CK937161; Name=CK937161; organism=Citrus sinensis; type=EST; length=546bp
TTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCC
TGGTGACTACGGTTGGGACACTGCTGGGCTTCAGCTGACCCAGAAACCTT
TGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGG
GAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAG
TTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAC
AGAATTGCTGGAGGGCTGCTCGGTGAAGTGACTGACCCATTGTACCCAGG
TGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTG
AGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATG
TTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
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