CK937138

Overview
NameCK937138
Unique NameCK937138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937138 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:   95 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 448
            P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ S  GYQPP
Sbjct:   17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
[Close]
BLAST of CK937138 vs. ExPASy Swiss-Prot
Match: CI023_HUMAN (Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf23 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:   95 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 448
            P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:   17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
The following BLAST results are available for this feature:
BLAST of CK937138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CI023_MOUSE3.320e-1232.50Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
CI023_HUMAN7.395e-1231.67Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004513_H01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937138 ID=CK937138; Name=CK937138; organism=Citrus sinensis; type=EST; length=807bp
GCGGGGGGGCATAAAAGAAGAAACGTAGCCGNNNAAGAGGGCGCTTTATC
TTCAAAGAGTGAAGAAAGATGGATGGTACCAAAGAGTGGAGAAGCCAAAA
GCAGAGACACCGATTGACGAGAATGAAATTCGGATTACGAGTCAAGGGAG
GATGCGCAGCTACATCACTTATGCTATGACTCTGCTTCAGGAAAGAGGTT
CCAATGAGATTGTATTCAAGGCAATGGGAAGGGCTATCAATAAGACTGTA
ACAATAGTGGAGCTAATAAAAAGAAGAATTGTTGGCCTTCATCAGAATAC
AGTTATTGGATCCACGGACATAACTGATACGTGGGAGCCTTTGGAGGAAG
GGCTTCTTCCGTTGGAAACCACAAGGCATGTGTCAATGATTACAATAACA
CTTTCAAAGAAGGAACTGAATAGGTCTTCTGTTGGGTATCAGCCTCCACT
GCCTGCTGAACAAGTTAAGCCATTGATAGAATTTGATTATGATGGAGAGG
GCTCACCTAATGGACCCCGTAGGGGTCGGATTGGTAGAGGAAGGTCAAGA
GGAAGAGGTAATGGTTTTGTGTCTGCTGAATATGATGATGGAGGTTGGGA
CCGCAATAATCGGGGCTATTCTAGAGGTAGGGGTCGAGGGAGAGGACGTA
GTTTCCGTGGCCGTGGGAGAGGAGGATATAATGGACCTCATTTTGATGCA
AGGCAAGATGGAGGCTACAATTATGAAGCACCTCCTCAAGGCAGTGGTCG
TGGCCGTGGAAGGGGAAACCGTGGTAGGGGCCGTGGCAATAGAGCAAATG
GGCCGAT
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