EL492628

Overview
NameEL492628
Unique NameEL492628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EL492628 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.871e-17
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 2 
Query:  110 DCRSSLVMSIGCTRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSAXSKNNDDKAGXE 316
            D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A SKN DDKAG E
Sbjct:   74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQE 142
The following BLAST results are available for this feature:
BLAST of EL492628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH6.871e-1757.97Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC4481 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4481, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492628 ID=EL492628; Name=EL492628; organism=Citrus sinensis; type=EST; length=319bp
CGTTCGCGCACTAGCCATGCATNNTACCGCGCACTTGNACGTACTTCTCG
ATGCGCTCTTCAGTTTATCTTCACCTGCTGCTTCGATTCCTTCCAAATCC
ATCCCTTTTGATTGCCGGTCTTCTCTTGTGATGAGCATAGGATGCACCCG
TTCTTTCAGTGAAGATGTTGCTCACATGCCTGTAATAAGAGACCCTGAAA
TTCAGCGTGCTTTCAAGGACTTGATGGCTGCAGACTGGGGTGAGCTTCCT
GCTTCTGTCATCCATGATGCAAAGAGTGCGNNGTCCAAAAATAATGATGA
CAAGGCTGGCCANGAGGTC
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