CX675259

Overview
NameCX675259
Unique NameCX675259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5483 contig Csv1_Contig5483:1..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675259 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.860e-96
Identity = 169/202 (83.66%), Postives = 188/202 (93.07%), Query Frame = -1
Query:  259 DMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLNNGPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVRKSS 864
            DMPKRELRVASNQILSLFQDNYPE+VA KIFINVPWYFS++YSMFSPFLTQRTKSKFV+SKEGN AETLYKF+RPEDIPVQYGGLSRP+D  NGPPKPASEF++KGGEKVNIQIEGIE GATITWDIVVGGWDLEYSAEFVPNAE SY I VEKP+K+  ++EA+ NSFT+ EAGKL+LSVDN+ SR++KVAAYRY VRKS+
Sbjct:  205 DMPKRELRVASNQILSLFQDNYPELVATKIFINVPWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDEAVCNSFTTVEAGKLILSVDNTLSRKKKVAAYRYTVRKST 406          
BLAST of CX675259 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.680e-45
Identity = 90/199 (45.23%), Postives = 128/199 (64.32%), Query Frame = -1
Query:  259 KRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLNNGPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVRKSS 855
            + E+ V   +++   QDNYPE V+R IFINVP++F  + ++ SPFLTQRTKSKFV+++   V ETL K++  +++PVQYGG     D      +  SE  VK G    I+I   E   T+ WDI V GW++ Y  EFVP  EG+YT+ V+K +K+  +E  IRNSF + +AGK+VL+VDN S +++KV  YRY  +  S
Sbjct:  342 RTEIWVGIKKVIETLQDNYPEFVSRNIFINVPFWFYAMRAVLSPFLTQRTKSKFVVARPAKVRETLLKYIPADELPVQYGGFKTVDD-TEFSNETVSEVVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGANEGPIRNSFKNSQAGKIVLTVDNVSGKKKKV-LYRYRTKTES 538          
BLAST of CX675259 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.399e-43
Identity = 91/200 (45.50%), Postives = 133/200 (66.50%), Query Frame = -1
Query:  268 KRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLS-RPSDLNN--GPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEE-AIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVR 855
            K+ELR A+ Q + L QDNYPE V ++ FINVPW++ + Y++  PF+T R+KSK V +     AETL+K++ PE +PVQYGGLS  P D N        ASE TVK G K  ++I  I     + W+I V GW++ Y AEFVP  + +YT+ ++KPRK+ PS+E  + +SF   E GK++L+VDN +S+++K+  YR+ V+
Sbjct:  291 KKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLVFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEII-IYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKL-VYRFNVK 488          
BLAST of CX675259 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.225e-40
Identity = 89/200 (44.50%), Postives = 128/200 (64.00%), Query Frame = -1
Query:  268 KRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLNNGP---PKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEE-AIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVR 855
            K ELR+A+ Q L L QDNYPE V+++IFINVPW++   Y + SPF++QR+KSK V +     AETL K++ PE +PVQYGGLS  +   N        A+E TVK   K  ++I   E   TI W+I V GW++ Y AEFVP  +  YT+ ++KPRK++   E  + +SF   E G+++L+VDN +S  +K+  YR+ V+
Sbjct:  466 KTELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFYRIISPFMSQRSKSKLVFAGPSRSAETLLKYISPEHVPVQYGGLSVDNCECNSDFTHDDIATEITVKPTTKQTVEIIVYEK-CTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDNPTS-TKKMLIYRFKVK 663          
BLAST of CX675259 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.025e-34
Identity = 76/178 (42.70%), Postives = 117/178 (65.73%), Query Frame = -1
Query:  292 FQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQ-RTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSR--PSDLNNGPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEE-AIRNSFTSKEAGKLVLSVDNSSSRRRKV 813
            F+DNYPE VA+++FINVPW++   Y  F   +T  RT+SK V+S     AET++K+V PE +PV+YGGLS+  P  + +G     +E  VK   K  I +   E G+T++W++ V G D+ Y A+F P+ E SYT+ V K RK+  ++E  I +SF + EAGK+V+++DN + +++KV
Sbjct:  503 FEDNYPEFVAKELFINVPWWYIPYYKTFGSIITSPRTRSKMVLSGPSKSAETIFKYVAPEVVPVKYGGLSKDSPFTVEDG----VTEAVVKSTSKYTIDLPATE-GSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQTFKKKKV 675          
BLAST of CX675259 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.695e-34
Identity = 77/195 (39.49%), Postives = 119/195 (61.03%), Query Frame = -1
Query:  277 KRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQ-RTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLNNGPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKI-SPSEEAIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRY 855
            KR L     + +  F+DNYPE  A+++FINVPW++   Y  F   +T  RT+SK V++     A+T++K++ PE +PV+YGGLS+ + L     +  +E  VK      I++   EA  T++W++ V G D+ Y A+F P  EGSY + V K RKI S  E  I +SF   E GK+V+++DN +S+++KV  YR+
Sbjct:  381 KRALWQFIRRAVKQFEDNYPEFAAKELFINVPWWYIPYYKTFGSIITSPRTRSKMVLAGPSKSADTIFKYIAPEQVPVKYGGLSKDTPLTE---ETITEAIVKPAANYTIELPASEA-CTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQTSKKKKV-LYRF 570          
The following BLAST results are available for this feature:
BLAST of CX675259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL6_ARATH1.860e-9683.66Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
PATL4_ARATH5.680e-4545.23Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL3_ARATH1.399e-4345.50Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH3.225e-4044.50Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL2_ARATH2.025e-3442.70Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL1_ARATH7.695e-3439.49Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_60H11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60H11-O22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675259 ID=CX675259; Name=CX675259; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTCCAACAAAGTTGAAATCTTCGTTTCTTCTACTATATACTAT
ATGAAGCCATTAGCCATACAAAGAAGCACAGAAATGCTGATACTCATCAT
CTGTTTTTCATTACATTACAACTACTAATTAGACTAATAATAAGGTTCAC
AGCCATTACTTAATTAATCTCTCAAAAAGCAGAAAAACAGAAACAAAGAG
ACCAAAATACCCTTTTAATATCTAGTCATCATTATTTTTGGTATTACACC
TAAACCAGGGAGGATTTGCGGACAATGTAACGATAAGCAGCGACCTTTCT
TCTCCGGGAAGAAGAGTTATCGACGGAGAGAACCAATTTGCCTGCCTCTT
TAGATGTAAAGGAGTTGCGAATTGCTTCTTCAGAAGGTGAAATTTTTCTG
GGTTTTTCAACAGCAATTGTGTAGCTGCCTTCAGCATTTGGCACAAATTC
TGCACTGTACTCCAAGTCCCAGCCTCCAACAACAATGTCCCATGTAATTG
TTGCACCAGCCTCAATGCCCTCAATCTGTATGTTAACTTTCTCTCCTCCT
TTGACAGTGAACTCAGAAGCTGGTTTAGGGGGACCATTGTTTAAATCACT
GGGTCGACTCAGTCCACCATACTGTACGGGAATGTCCTCTGGCCTTACAA
ATTTGTAAAGCGTCTCAGCAACATTCCCTTCCTTAGAAATCACAAACTTG
CTCTTAGTTCGCTGAGTTAAGAATGGACTGAACATTGAGTACAGCATGCT
GAAGTACCATGGCACATTGATAAAAATCTTCCGTGCAACCATTTCAGGAT
AATTATCTTGAAAAAGAGAGAGGATCTGATTAGAGGCAACCCTAAGCTCT
CTCTTGGGCATGTC
back to top