CK937130

Overview
NameCK937130
Unique NameCK937130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937130 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.511e-27
Identity = 60/140 (42.86%), Postives = 88/140 (62.86%), Query Frame = 2
Query:  356 FYSMILPSTIHNKMLRIPPKFVGQFGDELSSVAKLAVPDGRVWQVGLTKFGRKIWFHQGWQNFVESQSISAGYFLLFKYEKNSIFRVLIFDMTACEIDYPF--------EDDMACEMCVEISEEQFKHEAELLSRKRKME 751
            F+ ++LPST+ +KM+RIPP+FV   G +LS V  L  P G    + L + G +IWFH+GW  F E+ SI  G+FLLF+Y+KNS FRV+IF+ +ACE +YP         +DD+     +EI+ ++F  E +   R R +E
Sbjct:   30 FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAVHIIDSDDDV-----IEITGKEFDTEHKSKKRPRDIE 164          
BLAST of CK937130 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.576e-25
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  356 FYSMILPSTIHNKMLRIPPKFVGQFGDELSSVAKLAVPDGRVWQVGLTKFGRKIWFHQGWQNFVESQSISAGYFLLFKYEKNSIFRVLIFDMTACEIDY 652
            F+ +I  STI  K LR+P KFV +F DELS    L VPDG VW+VGL K   KIWF  GWQ FV+  SI  GY L+F+YE NS F V IF+++  EI+Y
Sbjct:    6 FHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104          
BLAST of CK937130 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.040e-24
Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  356 FYSMILPSTIHNKMLRIPPKFVGQFGDELSSVAKLAVPDGRVWQVGLTKFGRKIWFHQGWQNFVESQSISAGYFLLFKYEKNSIFRVLIFDMTACEIDYPFE 661
            F+ ++LPST+ +KM++IPP+FV   G +LS V  L  P G    + L + G +IWFH+GW  F E+ SI  G+FLLF+Y++NS FRV+IF+++ACE  YP +
Sbjct:   30 FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLD 131          
BLAST of CK937130 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.531e-19
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  344 TSSMFYSMILPSTIHNKMLRIPPKFVGQFGDELSSVAKLAVPDGRVWQVGLTKFGRKIWFHQGWQNFVESQSISAGYFLLFKYEKNSIFRVLIFDMTACEIDYPFED 664
            T   F  +IL S I  KM+++P +FV +FG +L+    L  P G    + + + G ++WF +GW  F E+ S+S G+FL F YE +S FRV+IFD++A EI+YP +D
Sbjct:   30 TVKKFIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDD 135          
The following BLAST results are available for this feature:
BLAST of CK937130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y4158_ARATH8.511e-2742.86B3 domain-containing protein At4g01580 OS=Arabidop... [more]
VRN1_ARATH3.576e-2554.55B3 domain-containing transcription factor VRN1 OS=... [more]
Y3896_ARATH1.040e-2448.04B3 domain-containing protein At3g18960 OS=Arabidop... [more]
Y1475_ARATH8.531e-1942.06B3 domain-containing protein At1g49475 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004513_H11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937130 ID=CK937130; Name=CK937130; organism=Citrus sinensis; type=EST; length=828bp
GCGGGGGTCCATCTCTTTCCTCCATTCAAANNNAAGCATGAACCACAACA
TCCCTTTCATCTTCTCCAATGCTTTGATTAAAAAACTTGTCCACGAACGG
GAGACCATGACACTGAATCCGGACACGCCAATACCAGAGATGACTGATTC
ACGACGGTGATGTGGAAGAATACCGACCAGTGACTTTCGCCGTCGACCCA
CAAACAATCCCAGTGTTTTTGAGCTGCGATGAGGAGCTAAAACAAACAGG
TGCTGTTGACCATACTATTCAAGTGTTCAATTGGATAAAAAATCAGAACA
ACTATTGGGCACAGGGGGTATCATGTCTAGTTCAGCTGCGGAGACTTCCT
CAATGTTCTACAGTATGATCCTTCCTTCCACCATCCATAACAAGATGCTA
AGGATTCCACCAAAGTTTGTGGGACAATTTGGAGATGAACTCTCTAGTGT
TGCTAAACTCGCAGTTCCTGATGGTCGGGTTTGGCAAGTGGGGTTAACAA
AATTTGGGAGAAAGATTTGGTTCCATCAGGGTTGGCAAAACTTTGTAGAA
AGTCAGTCAATTTCTGCTGGTTACTTTTTGCTTTTTAAGTATGAAAAGAA
TTCGATCTTTCGTGTTCTTATATTTGACATGACTGCCTGCGAGATTGATT
ATCCATTTGAGGATGACATGGCATGTGAGATGTGTGTTGAGATAAGTGAA
GAGCAGTTTAAGCATGAGGCTGAGCTGCTAAGCAGGAAGAGGAAAATGGA
AGATGGGCTGGAGAGAGATGAACCAAATGCTGAACCTGATTTGCTTGTAT
CACTAAGAAAAAGCGGAATATACATTAC
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