CK937125

Overview
NameCK937125
Unique NameCK937125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.833e-86
Identity = 172/254 (67.72%), Postives = 188/254 (74.02%), Query Frame = 2
Query:  113 SFLQAPMAALVPSTSVHS------LRSKSTRSLKTF-------CSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRA 835
            S LQA M +L+P +S  S        S   R+LKTF        SAKIP P    INP DPFLS L      SPE  +NRP N+   PYLDI+DSP LM+SPAQVERS  YNEHR              GRIVYIGMPLVPAVTELVVAELMYLQW+DPK PIY+YINSTGTTRDDGE+VGMESEGFAIYD+LMQ+K EVHTV VGAAIG ACLLL+AGTKGKRFMMPHAK MIQQPR+PSSGL+PASDVLIRA
Sbjct:    3 SCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPP---INPKDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRA 253          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.338e-27
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:  464 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRA 835
            RIVY+GMPL  +          VT+L++A+L+YLQ+ DP  PIY YINSTGT+   G++VG E+E FAI DTL  +K  VHT+ +G A+G A ++L++GTKG R  +PHA I++ Q R  + G   A+D+ IRA
Sbjct:   31 RIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRA 162          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.338e-27
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 2
Query:  464 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRA 835
            RI+Y+GMPL  +          VTEL++A+L+YL++ +P+ PIY YINSTGT+   G+++G E+E FAI DT+  +K  VHT+ +G A+G A ++L+ GT G R  +PHA I++ QPR  + G   ASD+ IRA
Sbjct:   33 RIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPRTGAQG--QASDIQIRA 164          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.892e-27
Identity = 88/234 (37.61%), Postives = 125/234 (53.42%), Query Frame = 2
Query:  101 AMSTSF--LQAPMAALVPSTSVHSLRSK----STRSLKTFCSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQP 784
            A +TSF  L+A  +A++PS S  +LRSK    S+ SL+   S    +P       +D   +KL      +P  F +     G +  +  +   +    P     S  +                   RIVY+GM LVP+VTEL++AE +YLQ+ D + PIYLYINSTGTT+ +GE +G ++E FAIYD +  +K  + T+ VG A G A LLL AG KG R  +P + IMI+QP
Sbjct:    6 ATATSFTTLRARTSAIIPS-STRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESL-NPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKN-----------------RIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-NGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQP 219          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.808e-24
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  464 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRL-PSSGLLPASDVLIRA 835
            RI Y+GMP+VPAVTEL+VA+ M+L + +P  PIYLYINS GT  +  E+VG E+E +AI DT+   K +V+T+  G A G A +LL+ G KG R + PH+   +  P++  SSG   A D+ I+A
Sbjct:  180 RICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSG--AAIDMWIKA 302          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.921e-23
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  464 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLI 829
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEI 147          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.921e-23
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  464 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLI 829
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEI 147          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.921e-23
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  464 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLI 829
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEI 147          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpP PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.398e-22
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  464 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQP 784
            RI++IG  +   V  +V+A+L++LQ  DP+  I++YINS G         GM S G AIYDT+  +K ++ T  +G A  MAC+LLAAGTKGKRF +PH+++MI QP
Sbjct:   28 RIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG---------GMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQP 125          
BLAST of CK937125 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.069e-20
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  464 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRA 835
            RI+++G  +   +  L+VA+++YL+  DP+  IYLYINS G         G    G AIYDT+  ++ +V T+ +G A  M   LLA GTKGKR  +PHA+IMI QP   + G  PA+D+ I+A
Sbjct:   26 RIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQG--PATDIEIQA 138          
The following BLAST results are available for this feature:
BLAST of CK937125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPR3_ARATH4.833e-8667.72ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNY31.338e-2748.51Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNE71.338e-2746.27Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR4_ARATH3.892e-2737.61ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH1.808e-2448.00ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP_THESQ9.921e-2347.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP19.921e-2347.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA9.921e-2347.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEYD8.398e-2247.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB2.069e-2042.74ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_H05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937125 ID=CK937125; Name=CK937125; organism=Citrus sinensis; type=EST; length=836bp
GCGGGGAGTTTCTTCTTCACTTCAAAATCNNNGTTCAAAACTACAAAGCA
CAATCAAAACAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAA
GCCATGTCGACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTC
AACTTCAGTTCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCT
TTTGCTCAGCTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAAC
GACCCCTTTCTTTCTAAACTCGCCGCTGCCGCGGCGGCCTCTCCGGAAGC
GTTTGTCAATCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCT
ACGATTCTCCCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCT
ACATACAATGAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCT
GCTTCTTCATGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTG
TCACAGAGCTTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCC
AAGGCACCTATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGA
TGGTGAATCGGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACAT
TGATGCAAATGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATA
GGCATGGCTTGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTAT
GATGCCTCATGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTG
GGTTGCTGCCCGCTAGTGATGTTCTTATTCGTGCAA
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