EY665856

Overview
NameEY665856
Unique NameEY665856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665856 vs. ExPASy Swiss-Prot
Match: NHLC2_BOVIN (NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.354e-22
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    8 SGSIRALTL*TGGSRLLAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALA-AQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDL 388
            S ++R ++L  G  + L GG+   P NLF FGD DG+G    LQHPLGV +  K   +YVADSYNHKIK +DP +   +TLAG G A    G++   +  +EP G+   +NG  L++ADTNN+ I+ LDL
Sbjct:  433 SSTVRTVSLKDGAVKHLVGGERD-PMNLFAFGDVDGVGINARLQHPLGVTWDQKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGNASNMIGSSFTDSTFNEPGGLCIGENGQLLYVADTNNHQIKVLDL 561          
BLAST of EY665856 vs. ExPASy Swiss-Prot
Match: NHLC2_CHICK (NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 2
Query:    8 SGSIRALTL*TGGSRLLAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALA-AQLSEPAGIIEAQNGNL-FIADTNNNIIRYLDL 388
            S ++R ++L  G  + L GG+   P NLF FGD DG G    LQHPLG+ +  K   +YVADSYNHKIK +DP     +TLAG G+A    G++   +  +EP G+   +NG L ++ADTNN+ I+ LDL
Sbjct:  428 SSTVRMISLKDGAVKHLVGGERD-PLNLFAFGDVDGAGINAKLQHPLGITWDKKRKLLYVADSYNHKIKVVDPKMKNCATLAGTGEASNVVGSSFTQSTFNEPGGLCIEENGRLVYVADTNNHQIKVLDL 556          
BLAST of EY665856 vs. ExPASy Swiss-Prot
Match: NHLC2_MOUSE (NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    8 SGSIRALTL*TGGSRLLAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGVYCAKNGQI-YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDL 388
            S ++R ++L  G  + L GG+   P NLF FGD DG G    LQHPLGV   +  Q+ YVADSYNHKIK +DP +   +TLAG G A     +   +  +EP G+   ++G  L++ADTNN+ I+ +DL
Sbjct:  433 SSTVRTVSLRDGAVKHLVGGERD-PMNLFAFGDVDGAGINAKLQHPLGVAWDEERQVLYVADSYNHKIKVVDPKTKGCTTLAGTGDASDASSSFAESAFNEPGGLCIGESGRLLYVADTNNHQIKVMDL 560          
BLAST of EY665856 vs. ExPASy Swiss-Prot
Match: NHLC2_HUMAN (NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 2
Query:    8 SGSIRALTL*TGGSRLLAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALA-AQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDL 388
            S ++R ++L  G  + L GG+   P NLF FGD DG+G    LQHPLGV +  K   +YVADSYNHKIK +DP +   +TLAG G       ++   +  +EP G+   +NG  L++ADTNN+ I+ +DL
Sbjct:  433 SSTVRTVSLKDGAVKHLVGGERD-PMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTNNVTSSSFTESTFNEPGGLCIGENGELLYVADTNNHQIKVMDL 561          
The following BLAST results are available for this feature:
BLAST of EY665856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NHLC2_BOVIN5.354e-2246.15NHL repeat-containing protein 2 OS=Bos taurus GN=N... [more]
NHLC2_CHICK1.010e-2045.38NHL repeat-containing protein 2 OS=Gallus gallus G... [more]
NHLC2_MOUSE1.319e-2044.19NHL repeat-containing protein 2 OS=Mus musculus GN... [more]
NHLC2_HUMAN1.319e-2043.85NHL repeat-containing protein 2 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665856 ID=EY665856; Name=EY665856; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGGCTCCATACGAGCACTCACTCTATAAACGGGAGGATCCA
GATTGCTAGCTGGTGGTGATCCTATTTTCCCAGACAATTTGTTTAAGTTT
GGAGACCAAGATGGAATAGGGTCTGAAGTACTTCTTCAACATCCATTAGG
TGTCTATTGTGCAAAGAATGGTCAAATTTATGTAGCAGATAGTTACAATC
ACAAGATCAAGAAGTTAGATCCAGCTAGTAATAGGGTCAGTACCCTAGCA
GGTATAGGGAAAGCTGGTTTCAAGGATGGAGCAGCATTAGCAGCTCAGCT
TTCGGAGCCGGCAGGAATCATTGAAGCACAGAATGGAAACCTTTTCATAG
CAGATACAAACAATAATATTATCAGATATCTAGACTTGAACAAGGAAGAA
CCTGAACTTCAAACTTTAGAGCTAAAAGGAGTTCAGCCCCCAACACCAAA
ATCCAGATCTCCAAAACGCCTCAGGAGGCGATCATCACCTGACTCTCAGA
CCCATTGTTGTTGATGGTGGTTTATCCAACGAAGGCAACATTTATCTTAA
GATATCATTACCTGAAGAGTACCCTTTCTTCAAGGAAGCACGCAGAAAAT
TCAGTGTTGATGTGGAACCTGAAAATGGCAGGATTATCCATCCTTTGGAT
GGGAATCTTAGTCCAAAAAGGATCGGCAGTACTTCATTTTTAGGAAAATG
GCTCCCTTCCCCTCCACGGGGGAAATTTATTTGAAGGGGCTATTATTGTA
AAAAAAATTAAGTTTGCTTGGACAACCCCCTTTTTTTGGGGGCCCCTTTC
CAAAAAGGAAATTCCCAATTCTTCCCCCACGCCGAAAATTACCTAACCTT
TTTTGTTTCTCAGGCCCCCAATTTTTCCCCACA
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