CX675258

Overview
NameCX675258
Unique NameCX675258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5949 contig Csv1_Contig5949:353..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675258 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.566e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:    2 LCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESGFSYRTPDHEAIDTPF 163
            LC+QPEPEFRPPMSEVVQ LVRLVQRASVVKRRSSD++GFSYRTP+HE +D  F
Sbjct:  650 LCIQPEPEFRPPMSEVVQQLVRLVQRASVVKRRSSDDTGFSYRTPEHEHVDISF 703
The following BLAST results are available for this feature:
BLAST of CX675258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SRF8_ARATH3.566e-2083.33Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60H10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60H10-O20-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675258 ID=CX675258; Name=CX675258; organism=Citrus sinensis; type=EST; length=492bp
TCTCTGTGTTCAGCCGGAACCCGAGTTTCGACCTCCCATGTCTGAAGTTG
TGCAAGCACTGGTACGGTTAGTACAAAGGGCAAGTGTAGTGAAAAGGCGG
TCCAGCGATGAATCAGGATTTTCCTATAGGACCCCAGATCACGAGGCTAT
TGACACGCCATTTTAACTGTAGCAACCGTGTTGAAGTTGAAAGCGAACTT
TGCAACTTTGAACACACAATGGCAGTGTCTGGAGAGATTTGAAGAACCCA
GATTAAGCGGAAAAGATGCTAAAAGGTTTCGGAGGCAGATCGAAAAGATA
TGTAATTATGTCCCATACATTCAACTACAATTTTCGACTTACAATGCAAA
TTAAGGTATATAATTATATTTAGCTGGAAAGGCTGCTCGATGTTGTAATT
TAAATTTTTCTTCGGATATCTCGATGTAACATTCAAGATGTTTGCGGCAT
AATAATAAATTTCCATGACTTGTAATAAAAAAAAAAAAAAAA
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