CK937118

Overview
NameCK937118
Unique NameCK937118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.583e-47
Identity = 100/123 (81.30%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIKV 444
            MARIKVHELRQK+K +               RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLT HQ SLKTEREKK+EMYFPMR YAIKV
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.501e-46
Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIKV 444
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLT HQASLKTEREKK+EMYFP+R YAIKV
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.267e-46
Identity = 99/123 (80.49%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIKV 444
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLT HQASLKTEREKK+EMYFP+R YAIKV
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.118e-45
Identity = 98/123 (79.67%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIKV 444
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLT HQASLKTEREKK+EMYFP+R YAIKV
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.047e-45
Identity = 97/123 (78.86%), Postives = 101/123 (82.11%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIKV 444
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLT HQASLKTEREKK++MYFP+R YAIKV
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIK 441
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLT H+  LKT++++++E  +P+R YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIK 441
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLT H+  LKT++++++E  +P+R YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIK 441
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL  H+ +LKT++++++E  +P+R YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIK 441
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL  H+ +LKT++++++E  +P+R YAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122
[Close]
BLAST of CK937118 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   76 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT*HQASLKTEREKKREMYFPMRMYAIK 441
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL  H+ +LKT++++++E  +P+R YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
The following BLAST results are available for this feature:
BLAST of CK937118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES6.583e-4781.3060S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH2.501e-4680.4960S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH4.267e-4680.4960S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH2.118e-4579.6760S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH8.047e-4578.8660S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT5.598e-3055.7460S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE5.598e-3055.7460S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN1.629e-2954.9260S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK1.629e-2955.7460S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN1.629e-2954.9260S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004514_A08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937118 ID=CK937118; Name=CK937118; organism=Citrus sinensis; type=EST; length=665bp
GNGGGAGGGTTTTCATAACCATACGCATAAGCANNNGAAGCCGCCGTTGC
AGGAGCAGAGACACCAAACGTAGCAATGGCTAGGATCAAGGTGCATGAGC
TGAGGCAGAAATCGAAGGTGGATCTTTTGAACCAGTTGAAGGAACTCAAG
GCTGAGCTCGCCCTCCTTCGCGTTGCTAAGGTCACCGGCGGTGCCCCTAA
CAAGTTATCCAAGATCAAGGTGGTGAGGTTATCGATCGCACAAGTGTTGA
CTGTCATTTCACAAAAGCAGAAGGCTGCATTGAGGGAGGCATACAAGAAT
AAGAAGTTCTTGCCCCTTGATCTGCGTCCCAAGAAGACCCGGGCTATCAG
GAGAAGGCTTACCTAGCACCAGGCTTCACTGAAGACCGAGCGGGAGAAGA
AGAGGGAGATGTACTTTCCCATGAGGATGTACGCCATTAAGGTGTAGGCT
AGAATCTTTTTCTAGGAGTATCTTGGTATCTTGCAGTTACGAACCTATTT
TGTTGACAAATTTTTACTTTTGTTACCTTTTCAAATATCATTTTTGTTCA
CTTAAATTTGCTTTTGTTCAATCTTATGTGTGTAAAACTTGAAGGGTGCA
CCTCAACCTAAACAAGATGTGCTAGATTGTGATCTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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