CK937113

Overview
NameCK937113
Unique NameCK937113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937113 vs. ExPASy Swiss-Prot
Match: TIF9_ARATH (Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.882e-44
Identity = 106/192 (55.21%), Postives = 136/192 (70.83%), Query Frame = 3
Query:  207 MSRATVELDFFGLENKE-NSSNKPQFKKFL-RQRSFRDIQGAISKINPEIIKSVIAS-----GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESN---DANV--ASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKERLTLVSPY 746
            MS+AT+ELDF GLE K+ N++ KP+F+KFL R+RSFRDIQGAISKI+PEIIKS++AS      S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R KA  I+K+A E  SK  ES+   D +V   +  + +L      GDLPIARRKSLQRFLEKRKERL   SPY
Sbjct:    1 MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGNNSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSRNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKERLVSTSPY 192          
BLAST of CK937113 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  483 SETAPLTIFYNGTVAVF-DVHREKAEHILKLAVEGNSKSFESNDANVASD--------------QQQQLLETLNTG--DLPIARRKSLQRFLEKRKERLTLVSPY 746
            S+TAPLTIFY G V VF D   EKA+ ++ LA +G + S   N  ++ S+                Q+ +++  T   +LPIARR SL RFLEKRK+R+T  +PY
Sbjct:  122 SQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPY 226          
BLAST of CK937113 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  426 TFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFD-VHREKAEHILKLAVEGNSKSFESNDANVASDQ----QQQLLETLN---------------------TGDLPIARRKSLQRFLEKRKERLTLVSPY 746
            T  DV + +   KS     S++APLTIFY G V VFD    EKA+ ++ LA +G++KSF    A V ++     Q+++  + N                       +LPIARR SL RFLEKRK+R+T  +PY
Sbjct:   97 TKEDVQMIKETTKSVKPE-SQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPY 228          
The following BLAST results are available for this feature:
BLAST of CK937113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TIF9_ARATH8.882e-4455.21Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE... [more]
TI10A_ARATH1.171e-1141.90Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH2.608e-1137.59Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_C02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937113 ID=CK937113; Name=CK937113; organism=Citrus sinensis; type=EST; length=773bp
GGGGGATCTCTCTCACACAATTTCGAATTCTCATGTCATGCGTACCTCGT
GCTCCATCTCCATCTCCATCTCCATCTCCATCTCCCTCCCGCTTAACCAT
TTAAGTTGTTCAACTTCTCCAAACCTCTAAAGCCAAAGTTCGTTTTTCTT
TTCTTCAACTCGTCTCTCACGATTCATTCACTACTCAACATTTTTCTTCA
TTAGCCATGTCTCGAGCTACCGTTGAACTCGATTTCTTCGGCTTGGAGAA
TAAAGAAAACTCCTCTAACAAGCCTCAGTTCAAGAAATTTCTTCGCCAAA
GAAGCTTTCGAGACATTCAAGGCGCCATTTCGAAGATTAATCCTGAGATT
ATTAAATCTGTGATTGCTTCTGGTTCTGCGAAATCATCAATCTCTTTGCC
GTCTACTCCAAAAGAAGAGCCGATTACTTTTCCCGACGTGCCTCTGTACA
GGCACATTCCAAAGTCTGGTTCAGAGAACGTTTCGGAAACAGCTCCTCTG
ACTATATTTTATAACGGAACCGTCGCCGTTTTTGATGTTCATCGAGAGAA
GGCTGAGCACATTCTGAAACTTGCTGTTGAAGGAAACTCAAAAAGTTTCG
AATCAAATGATGCTAACGTTGCAAGCGATCAGCAGCAACAGCTGCTTGAG
ACTCTTAATACTGGAGATCTGCCAATTGCGAGGAGAAAGTCACTCCAGAG
ATTTCTGGAGAAACGCAAAGAGAGATTGACTTTGGTGTCTCCTTATTCAT
GTCACACTTAAAAAAACGCGTTT
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