EY665855

Overview
NameEY665855
Unique NameEY665855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665855_ssr548 microsatellite EY665855_ssr548:548..557. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.356e-30
Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEKWGLENEGIS---------------RSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV 523
            KEP + V+NT LS MA +YP +K+ VY+SDDGG+S+T   + EA KF++ WLPFCK+  ++   PE YFS   +   D        E E +K  Y + K RV   +E   +E   I+                  DHP++++V+                 MP L+YV+REK    PH+FKAGALN L+
Sbjct:  112 KEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSRSD--------EAENLKMMYEDMKSRVEHVVESGKVETAFITCDQFRGVFDLWTDKFSRHDHPTIIQVLQNSETDMDNTRKYI---MPNLIYVSREKSKVSPHHFKAGALNTLL 289          

HSP 2 Score: 29.6462 bits (65), Expect = 1.356e-30
Identity = 17/34 (50.00%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  618 RVSGGMSNSPYILMLDWGMVLHGPTFGLGKPLCF 719
            RVSG M+NSP IL LD  M  + P   L + LC+
Sbjct:  290 RVSGVMTNSPIILTLDCDMYSNDPA-TLVRALCY 322          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.767e-30
Identity = 72/195 (36.92%), Postives = 100/195 (51.28%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEKWGLENEGIS---------------RSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLII 541
            KEP + V+NT LS MA +YP  K+ VY+SDDGG+S+TL  + EA KF++ WLPFCK   ++   PE YFS   +   D        E E +K  Y + K RV   +E   +E   I+                  DHP+++ V+                 MP L+YV+REK    PH+FKAGALN L+  S ++
Sbjct:  109 KEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYFSSKSHSSSD--------EAENLKMMYEDMKSRVEHVVESGKVETAFIACDQFSCVFDLWTDKFTRHDHPTIIMVL----------QHNETEMMPNLIYVSREKSKVSPHHFKAGALNTLLRVSAVM 285          

HSP 2 Score: 28.8758 bits (63), Expect = 1.767e-30
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 3
Query:  618 RVSGGMSNSPYILMLDWGMVLHGPTFGLGKPLCF 719
            RVS  M+NSP IL LD  M  + PT  L   LC+
Sbjct:  280 RVSAVMTNSPIILTLDCDMYSNNPTTPL-HALCY 312          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.608e-30
Identity = 71/189 (37.57%), Postives = 98/189 (51.85%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEKWGLENEGIS---------------RSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV 523
            KEP + V+NT LS MA +YP +K+ VY+SDDGG+S+TL  + EA KF++ WLPFCK+  ++   PE YFS       D        E E IK  Y + K RV   +E   +E   I+                  DHP++++V+                 MP L+YV+REK     H+FKAGALN L+
Sbjct:  131 KEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSD--------EAENIKMMYEDMKSRVEHVVESGKVETAFITCDQFRGVFDLWTDKFTRHDHPTIIQVLQNSENDMDDTKKYI---MPNLIYVSREKSKVSSHHFKAGALNTLL 308          

HSP 2 Score: 28.8758 bits (63), Expect = 8.608e-30
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  618 RVSGGMSNSPYILMLDWGMVLHGPTFGLGKPLCF 719
            RVSG M+NSP IL LD  M  + P   + + LC+
Sbjct:  309 RVSGVMTNSPIILTLDCDMYSNDPATPV-RALCY 341          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.395e-29
Identity = 72/200 (36.00%), Postives = 109/200 (54.50%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEK--------WGLENEGI----SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVH 565
            KEP +   NTVLS +A+DYP +K+  Y+SDDG + +T   + E  +FAR W+PFCK+F I+   PE YFS   +   D  +  F+ ER  +K +Y EFK R+   + K        W +  +G     + +RDHP +++V                 ++P LVYV+REKRP   H+ KAGA+N L+  S ++     M++
Sbjct:  357 KEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINALVAKAQKVPAEGW-IMKDGTPWPGNNTRDHPGMIQVF----LGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLN 551          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.395e-29
Identity = 72/200 (36.00%), Postives = 109/200 (54.50%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEK--------WGLENEGI----SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVH 565
            KEP +   NTVLS +A+DYP +K+  Y+SDDG + +T   + E  +FAR W+PFCK+F I+   PE YFS   +   D  +  F+ ER  +K +Y EFK R+   + K        W +  +G     + +RDHP +++V                 ++P LVYV+REKRP   H+ KAGA+N L+  S ++     M++
Sbjct:  357 KEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINALVAKAQKVPAEGW-IMKDGTPWPGNNTRDHPGMIQVF----LGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLN 551          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEK--------WGLENEGI---SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVH 565
            KEP +   NTVLS +++DYP EK+  Y+SDDG A +T   + E  +FA+ W+PFCK+F I+   PE YF    +   D   A F+ ER  +K  Y EFK R+   + K        W +++      +  RDHP +++V                 ++P LVYV+REKRP + H+ KAGA+N LV  S ++    ++++
Sbjct:  369 KEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYFQQKIDYLKDKVAASFVRERRAMKRDYEEFKVRINALVAKAQKVPEEGWTMQDGSPWPGNNVRDHPGMIQVF----LGQSGGRDVEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLSNAPYLLN 563          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 71/200 (35.50%), Postives = 109/200 (54.50%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEK--------WGLENEGIS----RSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVH 565
            KEP +   NTVLS +A+DYP +K+  Y+SDDG A +T   + E  +F++ W+PFCK+F I+   PE YFS   +   D     F+ ER  +K +Y EFK R+   + K        W +E +G S      RDHP +++V                 ++P L+YV+REKRP   H+ KAGA+N L+  S ++    ++++
Sbjct:  352 KEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINILVAKAQKIPEDGWTME-DGTSWPGNNPRDHPGMIQVF----LGHSGGLDTDGNELPRLIYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLN 546          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAI-------EKWGLENEGI----SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVHNL 571
            KEP +   NTVLS +A+DYP EK+  Y+SDDG A +T   + E  +FAR W+PFCK++ I+   PE YFS   +   D  +  F+ ER  +K  Y E+K R+   +       E+  +  +G     +  RDHP +++V                 ++P LVYV+REKRP + H+ KAGA+N LV  S ++ T+   + NL
Sbjct:  278 KEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWIMQDGTPWPGNNPRDHPGMIQVF----LGETGARDFDGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVL-TNAPYILNL 473          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAI-------EKWGLENEGI----SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVHNL 571
            KEP +   NTVLS +A+DYP EK+  Y+SDDG A +T   + E  +FAR W+PFCK++ I+   PE YFS   +   D  +  F+ ER  +K  Y E+K R+   +       E+  +  +G     +  RDHP +++V                 ++P LVYV+REKRP + H+ KAGA+N LV  S ++ T+   + NL
Sbjct:  278 KEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWIMQDGTPWPGNNPRDHPGMIQVF----LGETGARDFDGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVL-TNAPYILNL 473          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 71/199 (35.68%), Postives = 110/199 (55.28%), Query Frame = 2
Query:    2 KEPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAI-------EKWGLENEGI----SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLIIHTHTHMVH 565
            KEP +   NTVLS +A+DYP +K+  Y+SDDG A +T   + E  +FAR W+PFCK++ I+   PE YF+   +   D   A F+ +R  +K +Y EFK RV   +       E+  +  +G     + +RDHP +++V                 ++P LVYV+REKRP   H+ KAGA+N LV  S ++    ++++
Sbjct:  359 KEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVF----LGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQYLLN 553          
The following BLAST results are available for this feature:
BLAST of EY665855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLG1_ARATH1.356e-3037.04Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLG2_ARATH1.767e-3036.92Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG3_ARATH8.608e-3037.57Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CESA9_ORYSJ4.395e-2936.00Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI4.395e-2936.00Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA6_ORYSJ7.496e-2935.68Probable cellulose synthase A catalytic subunit 6 ... [more]
CESAA_ARATH9.791e-2935.50Probable cellulose synthase A catalytic subunit 10... [more]
CESA4_ORYSJ9.791e-2936.82Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI9.791e-2936.82Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA2_ORYSJ9.791e-2935.68Probable cellulose synthase A catalytic subunit 2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665855 ID=EY665855; Name=EY665855; organism=Citrus sinensis; type=EST; length=869bp
TAAAGAGCCAACTGTGGAGGTAATGAATACGGTTTTGTCAGCTATGGCGC
TTGATTATCCGCCAGAGAAGCTGCATGTTTACCTTTCAGACGATGGAGGT
GCTTCTATAACTTTGCTTGGTATGAGGGAAGCTTGGAAGTTTGCAAGATC
GTGGCTTCCGTTTTGTAAGAGGTTTGGGATCAAAACAATATGCCCTGAAG
CTTATTTTTCTGATCCAGAGAATGGTGATGGTGACTCTGGAAATGCTGAG
TTCATTGTTGAGAGGGAAAAGATTAAGGAAAAATACACTGAGTTCAAGGA
ACGGGTAACGAGAGCCATTGAAAAATGGGGGCTAGAGAACGAAGGCATTT
CCAGAAGTCGAGATCATCCTTCTGTGGTTGAGGTGATAGGAGAAAACGAT
AATGAAGCAGCGAATGAGGAACAACAAATGAATAATAAGATGCCTCTCCT
TGTCTATGTTGCTCGCGAGAAAAGGCCTTCTCATCCACACAATTTCAAGG
CTGGAGCCTTAAACGTTCTTGTATGATCTTCTCTAATCATTCACACTCAC
ACACACATGGTGCATAATTTAATTGCATGCATATGCTTAATAGAAGCTGT
TGTTGATGTTGTAGCTTCGGGTTTCCGGGGGAATGAGCAACTCTCCCTAT
ATATTGATGCTAGACTGGGGCATGGTATTGCATGGACCCACTTTCGGGTT
AGGCAAGCCCTTGTGTTTCCCCCTTTGTTCCCAAAATCCTCTTCCTCCGT
TACCTTTCGTTCAGTTTCCCCCAAAAATTTTCTTAAAATTCCTCCCCGGA
TTGGTATTTTTTGGACCCCCCCCGTCCCCAAATTTTTTTCTTGGGGGAAT
GACCCTTATTTGAACCCCC
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