CK937109

Overview
NameCK937109
Unique NameCK937109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937109 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.653e-27
Identity = 84/216 (38.89%), Postives = 106/216 (49.07%), Query Frame = 2
Query:    5 ISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH--EKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDAL 646
            ISS FS+LI+STLLQNP          + WPY ++  S DS T           SSPPS+                 HGLLP+CAP   P TC P    AV +    ++     D  +NT         QP  + + ALQ QN ASKS    + DS+E+   KL  + K  D   E+      +HDSN  + +  VDRSSCGSNTPS S+ ETDAL
Sbjct:  293 ISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSST--------PMSSSPPSITAIAAATVAAATAWWASHGLLPVCAP--APITCVPFSTVAVPTPAMTEM-----DTVENT---------QPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDAL 484          
BLAST of CK937109 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.438e-16
Identity = 70/224 (31.25%), Postives = 98/224 (43.75%), Query Frame = 2
Query:    2 GISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPF-------HTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSS-EVETDA 643
            G   +F + I+STLLQ P          +FWP    ++S  SP            +SPP++                 +GLLPLCAP        H P T  P+C    +   T Q  + ++ +                 E+SEA +A++S       L S+  E+ S       K   HE+ S   E++   S+   +RKQVDRSSCGSNTPSSS +VE DA
Sbjct:  259 GDYQSFPNHIMSTLLQTPALYTAATFASSFWP---PDSSGGSPV---------PGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQ----------------EHSEASKARSS-------LDSEDVENKS-------KPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADA 440          

HSP 2 Score: 28.1054 bits (61), Expect = 4.438e-16
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  720 RRSRSSSNITDSWK 761
            RRSR SSNITD WK
Sbjct:  470 RRSRISSNITDPWK 483          
The following BLAST results are available for this feature:
BLAST of CK937109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LHY_ARATH3.653e-2738.89Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH4.438e-1631.25Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937109 ID=CK937109; Name=CK937109; organism=Citrus sinensis; type=EST; length=807bp
GGGCATCTCATCCGCATTTTCAAGTCTTATAGTGTCTACTCTGTTACAAA
ACCCTGCGGCCCATGCTGCAGCAAGCTTTGCTGCTACATTTTGGCCCTAT
ACAAATATGGAAACTTCAGCTGATTCTCCTACATGTCCGCAGGGTGGTTT
CTTATCTAGACAAATGAGCTCCCCGCCAAGTATGGCAGCTATTGCCGCAG
CCACTGTAGCAGCTGCCACTGCATGGTGGGCAGCACATGGACTGCTTCCC
TTGTGTGCCCCATTTCATACTCCTTTTACCTGCCCTCCTGCTTGTGCAAC
TGCAGTTTCATCAATGGATACTGCACAAGTTCCGGCAGCCAAGACAGACA
AAAATGACAATACTCCTCCAAATCCTGCCTTAAAGGATCATCAACCAGAC
CTTGAATATTCTGAAGCTTTGCAAGCTCAAAATTCAGCGTCTAAATCACT
CACTGTGTTAACATCAGATTCCGAGGAGAGTGCAAGTGCGAAGCTTAAAA
TGGAACTGAAAGCTACTGATCATGAGAAGAATTCTGAAGAAAATGAGCTT
CATGATTCAAACAAAACAAAAAACAGAAAGCAGGTAGACCGTTCATCATG
CGGTTCCAATACACCTTCTAGCAGTGAAGTTGAAACTGATGCATTAGAAA
AGCAAGAGAAAGGCAAAGAGGAGTCTAAAGAAATTGATCCGAGTCTTCCT
GCCACCGATCCTGGTAAACCGTCGTAGTAGAAGCAGCAGTAACATTACCG
ATTCTTGGAAAGGAAGTTTCTGAAGTGGGGCGGCTGGGCTTTTCAAGCAC
NNNTCTC
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