CK937109
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937109 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 3.653e-27 Identity = 84/216 (38.89%), Postives = 106/216 (49.07%), Query Frame = 2 Query: 5 ISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH--EKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDAL 646 ISS FS+LI+STLLQNP + WPY ++ S DS T SSPPS+ HGLLP+CAP P TC P AV + ++ D +NT QP + + ALQ QN ASKS + DS+E+ KL + K D E+ +HDSN + + VDRSSCGSNTPS S+ ETDAL Sbjct: 293 ISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSST--------PMSSSPPSITAIAAATVAAATAWWASHGLLPVCAP--APITCVPFSTVAVPTPAMTEM-----DTVENT---------QPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDAL 484
BLAST of CK937109 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.438e-16 Identity = 70/224 (31.25%), Postives = 98/224 (43.75%), Query Frame = 2 Query: 2 GISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPF-------HTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSS-EVETDA 643 G +F + I+STLLQ P +FWP ++S SP +SPP++ +GLLPLCAP H P T P+C + T Q + ++ + E+SEA +A++S L S+ E+ S K HE+ S E++ S+ +RKQVDRSSCGSNTPSSS +VE DA Sbjct: 259 GDYQSFPNHIMSTLLQTPALYTAATFASSFWP---PDSSGGSPV---------PGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQ----------------EHSEASKARSS-------LDSEDVENKS-------KPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADA 440 HSP 2 Score: 28.1054 bits (61), Expect = 4.438e-16 Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 720 RRSRSSSNITDSWK 761 RRSR SSNITD WK Sbjct: 470 RRSRISSNITDPWK 483 The following BLAST results are available for this feature:
BLAST of CK937109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937109 ID=CK937109; Name=CK937109; organism=Citrus sinensis; type=EST; length=807bpback to top |