CK937107

Overview
NameCK937107
Unique NameCK937107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937107 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.808e-27
Identity = 66/124 (53.23%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   67 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 432
            MA ITAS   S +  + LVH   +  SSSP+LGLP+   + KV CS+E KPS  E+ T  N                      LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of CK937107 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   67 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 429
            MA+ TAS  T S     L+ KP+ VA S+PVLGLP    K G VRCSME   +KQ + + +G                     LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of CK937107 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 50/123 (40.65%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   67 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 429
            MA ++A+  TS +  +VL             LGLP    +   +VRC+     SK+ +                         LVD+RMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of CK937107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL5.808e-2753.23Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH2.364e-2051.22Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.641e-1340.65Photosystem II reaction center W protein, chloropl... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004514_B07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937107 ID=CK937107; Name=CK937107; organism=Citrus sinensis; type=EST; length=769bp
GGGGGACCACAGCAAACATCTTTGTGCTCATTCTTCACTCCATCTCGTCT
TCCAACTCCAAGAAAAATGGCCGCCATCACTGCTAGCGTAGGAACATCAT
CGATTACACCCTCGGTTCTTGTACACAAGCCATCCATTGTAGCTTCATCA
TCCCCTGTTCTTGGATTGCCAGCAAAGGCAGTGAAGGGGAAAGTGAGATG
TTCGATGGAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAA
TGAGTGCGTCACTGCTGGCAGCAGCATGCGCGGCAACAATGTCAAGCCCA
GCCATGGCTCTTGTTGATGATAGAATGAGCACTGAAGGAACAGGGCTTCC
ATTCGGCTTGAGCAACAACCTCCTTGGGTGGATTCTGTTGGGTGTTTTTG
GTCTCATCTGGGCCCTCTACATTCCTTACGCTTCCAGTCTTGATGAAGAT
GAAGAGTCCGGATTGTCCCTCTAACAGTCCGAAGTCTAAAGCCAAACCCC
TTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCCTTAAATTTGTTTTA
GTAAAATCTATCTTTTGTGTTTCTGTTTCTTGACTCATGTTTCCTCTCTG
TGCAATGTTATTTTCTCTTTAATGCTTCATTTGATCGTGGAGTATTCGAA
GCTGGGGGAATTTAGGATATTAAATCTATTTTCTTGACAACCAAGTAATT
AATTATTACTGTTAAAAATACCCAANNNNCCATTACTTGGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
back to top