CK937093

Overview
NameCK937093
Unique NameCK937093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2003 contig Csv1_Contig2003:1..825. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CITSI (Photosystem I assembly protein ycf4 OS=Citrus sinensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.308e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_GOSHI (Photosystem I assembly protein ycf4 OS=Gossypium hirsutum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.660e-38
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLY+E RG GA+PL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_GOSBA (Photosystem I assembly protein ycf4 OS=Gossypium barbadense GN=ycf4 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.660e-38
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLY+E RG GA+PL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_SOLTU (Photosystem I assembly protein ycf4 OS=Solanum tuberosum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.285e-37
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFL+KDIQS+RIEVKEGIYARRVLY++ RG G+IPL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLIKDIQSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_SOLLC (Photosystem I assembly protein ycf4 OS=Solanum lycopersicum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.285e-37
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFL+KDIQS+RIEVKEGIYARRVLY++ RG G+IPL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLIKDIQSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_SOLBU (Photosystem I assembly protein ycf4 OS=Solanum bulbocastanum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.285e-37
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFL+KDIQS+RIEVKEGIYARRVLY++ RG G+IPL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLIKDIQSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_PLAOC (Photosystem I assembly protein ycf4 OS=Platanus occidentalis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.285e-37
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRF MKDIQSIRIEVKEG+Y RRVLY+E RG GAIPL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFFMKDIQSIRIEVKEGLYPRRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_NICTO (Photosystem I assembly protein ycf4 OS=Nicotiana tomentosiformis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.285e-37
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFL+KDIQS+RIEVKEGIYARRVLY++ RG G+IPL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLIKDIQSVRIEVKEGIYARRVLYMDIRGQGSIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_COFAR (Photosystem I assembly protein ycf4 OS=Coffea arabica GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.903e-37
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFL+KDIQSIRIEVKEGI+ARRVLY+E RG G IPL RTDENLTPREIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLIKDIQSIRIEVKEGIFARRVLYMEIRGQGTIPLTRTDENLTPREIEQKAAELAYFLRVPIEVF 184
[Close]
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_MORIN (Photosystem I assembly protein ycf4 OS=Morus indica GN=ycf4 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.016e-37
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 2 
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLY+E RG G+IPL RTDENLT REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGSIPLTRTDENLTLREIEQKAAELAYFLRVPIEVF 184
The following BLAST results are available for this feature:
BLAST of CK937093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
YCF4_CITSI9.308e-42100.00Photosystem I assembly protein ycf4 OS=Citrus sine... [more]
YCF4_GOSHI3.660e-3892.86Photosystem I assembly protein ycf4 OS=Gossypium h... [more]
YCF4_GOSBA3.660e-3892.86Photosystem I assembly protein ycf4 OS=Gossypium b... [more]
YCF4_SOLTU5.285e-3789.29Photosystem I assembly protein ycf4 OS=Solanum tub... [more]
YCF4_SOLLC5.285e-3789.29Photosystem I assembly protein ycf4 OS=Solanum lyc... [more]
YCF4_SOLBU5.285e-3789.29Photosystem I assembly protein ycf4 OS=Solanum bul... [more]
YCF4_PLAOC5.285e-3790.48Photosystem I assembly protein ycf4 OS=Platanus oc... [more]
YCF4_NICTO5.285e-3789.29Photosystem I assembly protein ycf4 OS=Nicotiana t... [more]
YCF4_COFAR6.903e-3790.48Photosystem I assembly protein ycf4 OS=Coffea arab... [more]
YCF4_MORIN9.016e-3791.67Photosystem I assembly protein ycf4 OS=Morus indic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004514_D10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937093 ID=CK937093; Name=CK937093; organism=Citrus sinensis; type=EST; length=825bp
NCGGCCGGGATACTTATATACAATTATNNNAGTATACTTAATATACATTT
ATATACGAATTAGAATATGATAATAATTAGAATATGAATTCTAATTATTA
TAGGATATCCTTATACCAATAACAGGTACAAATATTAAATCGAGGTACCC
TTTCTATGACAATTCTCAACAGCTTTCCCTCTATTTTTGTGCCTTTAGTG
GGCCTAGTATTTCCGGCAATGGCAATGGCTTCGTTATTTCTTTATCTTGA
AAAAAATAAGATTTTGTAAATCCGATCGGATCAAGGTCAAATCTCGTCTA
GTTTTTTTCAAGACTTAGCGATGACGGATATCCATTTAGTAGAATAGTGT
GTATTTTTCGTTGGGGATTTCCTGGAAAAAATCGCCGCATCTTTCTACGA
TTCCTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTAT
TTATGCTCGTCGTGTCCTTTATATAGAAAGCAGAGGCTTGGGGGCCATTC
CCTTGAATCGTACTGATGAGAATTTGACTCCGCGAGAAATTGAGCAAAAG
GCTGCGGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGGATTTTGAAA
AATGAACTGAAGAATAAACGCTTTCTTAGCAGGAGGAAACCCCCACGAAT
CCATTTTTCTTTAGCAAAACGGACTTGATTGAAGTTTCTTCCGAACGACC
TGTTGGACCAAAGCAAACGTGTACGGAACAGCCATAATCTAAAACGAAAC
CCTTTTCTTTTATACTTTCTTTTGTCTTTACTACTGACCAAAGAATTGGA
TCTCATAAAATGAGGACTTTTCCGT
back to top