CK937089

Overview
NameCK937089
Unique NameCK937089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937089_ssr103 microsatellite CK937089_ssr103:103..117. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937089_ssr162 microsatellite CK937089_ssr162:162..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK937089 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 98/114 (85.96%), Postives = 109/114 (95.61%), Query Frame = 1
Query:  286 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELF 627
            MA++L MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKDS RQ+KQLEELT +MRECKRL+KE DRE+KDEEARN PEVNKQLNDEKQSMIKELNSYVALRKTYM++LGNKKVELF
Sbjct:    1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELF 114          
BLAST of CK937089 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.082e-48
Identity = 93/114 (81.58%), Postives = 107/114 (93.86%), Query Frame = 1
Query:  286 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELF 627
            MA++L MSP LEQIHGEIRD+FRAL+NGFQ+LDKIKDS+RQ+KQLEEL  +MR+CKRL+KE DRE+KD EARN P+VNKQLNDEKQSMIKELNSYVALRKTY+N+LGNKKVELF
Sbjct:    1 MASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELF 114          
BLAST of CK937089 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 68/110 (61.82%), Postives = 88/110 (80.00%), Query Frame = 1
Query:  304 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSL--GNKKVELF 627
            +S +L +I G+I D FRALSNGFQKL+KIKD+NRQ++QLEELT +MR+CK LIK+ DREIK  E+ N    N+ LND +QSM+KELNSYVAL+K Y ++L   NK+V+LF
Sbjct:    7 VSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLF 116          
The following BLAST results are available for this feature:
BLAST of CK937089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPS13_ARATH5.189e-5185.96Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP... [more]
NPS12_ARATH1.082e-4881.58Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP... [more]
NPS11_ARATH4.131e-3261.82Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_D05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937089 ID=CK937089; Name=CK937089; organism=Citrus sinensis; type=EST; length=627bp
GGGGAATTTTTTAACTTTTATTTTCCAAAATTCCTGAAGTTCTCTCGGCA
TCAGCCCAAAATTTCCCCCTTTTTGCTATATTTCAATGGTATTGATATCT
ACATTATTATTATTATTTGTTTTTTATTAAAAGGAAAGAGGAGTACTGTT
CGGTGAGGGCTTTAATTAATTAATTAATTTTTTAAATTTCCTAAAAACTC
CCAGCAACTGAGAGGATCGAAGCAATTTGAATGCCGTGGTGATAATTTAG
TTGCCGGAGATTTTGATTGATTTTCCGGCGTAATTATGGCGACCGATTTG
CAGATGAGCCCTCAGTTGGAGCAGATCCACGGCGAAATTCGCGATAATTT
TCGAGCTCTCTCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGATTCCA
ACCGACAAACTAAGCAGCTGGAAGAACTCACTGGGAGGATGAGGGAGTGT
AAAAGATTAATTAAAGAGATGGATCGTGAAATTAAAGATGAAGAAGCCCG
AAATCCTCCGGAAGTCAATAAGCAACTCAATGACGAGAAGCAATCTATGA
TAAAAGAGTTGAACTCTTATGTTGCATTGAGGAAAACGTATATGAATAGC
CTTGGTAATAAGAAGGTTGAACTCTTT
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