CK937081

Overview
NameCK937081
Unique NameCK937081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_RAT (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 57/131 (43.51%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  297 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG FPD+ M+              CT+ND+ DRD D  VERT  RPIA+G ++                      N +S   GA+S LLV +YPLM
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDFDKKVERTANRPIAAGDISAFQSFVFLGAQLTLALGVLLHLNYYSIAMGAASLLLVVTYPLM 198          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_MOUSE (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.872e-22
Identity = 56/131 (42.75%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  297 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG FPD+ M+              CT+ND+ DRD D  V RT  RPIA+G ++                      N +S   GA+S LLV +YPLM
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDFDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIAMGAASLLLVVTYPLM 198          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_CAEEL (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Caenorhabditis elegans GN=coq-2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 54/130 (41.54%), Postives = 63/130 (48.46%), Query Frame = 3
Query:  297 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPL 686
            P   + Y +L R+DKPIGTWLL WPC WSI MA P G  P   M+              C +NDL D+D D  VERT+LRP+A G LT                      N +S   GASS  LV  YPL
Sbjct:   59 PPNLKPYLQLMRVDKPIGTWLLYWPCTWSIAMATPAGQLPSIYMLSLFGAGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLLAGLLSSSLAILLQLNWYSVAVGASSMALVVGYPL 188          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_DROME (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  306 ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            A+ YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+              CT+NDL D+DID  VERTRLRP+ASG ++                      N  S + GASS  LV +YPLM
Sbjct:   77 AKPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPLM 204          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_HUMAN (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  297 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG FPD+ M+              CT+ND+ D+D D  V RT  RPIA+G ++                      N +S   GA S LLV +YPLM
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLM 198          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_BOVIN (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  297 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG  PD+ M+              CT+ND+ DRD D  V RT  RPIA+G ++                      N +S   GA+S LLV +YPLM
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGCTINDMWDRDYDKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAASLLLVTTYPLM 198          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_DROPS (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  309 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            + YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+              CT+NDL D+DID  VERTR RP+ASG ++                      N  S + GASS  LV +YPLM
Sbjct:   84 KPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPLM 210          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_AEDAE (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 52/125 (41.60%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  315 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRIPGASSXLLVFSYPLM 689
            YA+L R+D+PIG+WLL WPC WSI ++AP G +PD   +              CT+ND+ DRDID  V RTR RP+ +G LT                      N +S + GASS  LV  YPLM
Sbjct:  119 YARLMRIDRPIGSWLLFWPCGWSIALSAPAGCWPDLWTLTLFGAGAFIMRGAGCTINDMWDRDIDGKVARTRNRPLVAGELTSADAWFFLGAQLGVGLLILLELNWYSIVLGASSLGLVIIYPLM 243          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: COQ2_DICDI (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.064e-18
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  279 WIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLT 560
            WI  + P   + Y +L+R+DKPIG WLL +PC WSI++AAP G FPD K M              C +ND+ D   D+ VERT+ RPIAS  LT
Sbjct:  160 WISKF-PNSVQPYLRLSRVDKPIGVWLLLYPCCWSISLAAPAGSFPDLKTMLVFGIGAYVMRSAGCVINDMADYKFDSKVERTKTRPIASKQLT 252          
BLAST of CK937081 vs. ExPASy Swiss-Prot
Match: UBIA_SHEB5 (4-hydroxybenzoate octaprenyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ubiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  294 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASG 551
            L R+   Y++L R+D+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERTR RP+ASG
Sbjct:    3 LKRKWDVYSRLTRIDRPIGTLLLLWPCLMALMLAA--GGMPDLKVLVIFIIGVVIMRACGCIINDYADRDLDSFVERTRSRPLASG 86          
The following BLAST results are available for this feature:
BLAST of CK937081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
COQ2_RAT1.586e-2243.51Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_MOUSE7.872e-2242.75Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_CAEEL1.028e-2141.54Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_DROME1.754e-2142.97Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_HUMAN3.907e-2141.98Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_BOVIN6.664e-2141.98Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_DROPS1.939e-2041.73Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_AEDAE1.939e-2041.60Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_DICDI1.064e-1846.81Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
UBIA_SHEB51.590e-1444.194-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004514_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937081 ID=CK937081; Name=CK937081; organism=Citrus sinensis; type=EST; length=690bp
GGGGGCGAAAAATGTCGTCGTTTTCGGTGCCTCGCGTTTTCCGGAGGAGC
AGATACCTAAAACCATCGTTGTCTCTTCTCCTCAGCGGCAACAACAATCC
ATCTAATCCAGTCCTAAACCCTAAACTTAGCCCTAATGTAGCCAAATTGA
CGAATCATTACCGTTGGATGCCAAATTCTGAACAAAATTTCAGATACGTA
TGGGTAGCAAGCATCTGTACAACACCGTCGCAGTCAAGTGTTGAGAAAGA
GACTAGTAGTAGTAATGAGAAATCATCGTGGATTGACTTGTATTTGCCGA
GACAAGCGAGGGCTTATGCGAAGCTGGCTCGGCTTGATAAGCCAATCGGG
ACGTGGCTGCTGGCTTGGCCTTGTATGTGGTCAATTACAATGGCGGCGCC
ACCTGGACACTTTCCGGATTTCAAAATGATGGCGCTCTTTGGCTGTGGCG
CTCTCCTTCTACGCGGGGCCGGGTGTACCGTTAATGACCTCCTTGATAGG
GATATTGATAATATGGTGGAACGCACAAGGTTAAGGCCCATTGCGAGTGG
TCTTCTAACACCGTTTCAAGGACTTTCTTTTCTTGGGTTTCAATTGCTTT
TAGGTCTTGGGATTCTTCTCCAGTTGAATAATTTTAGCCGCATTCCGGGG
GCTTCTTCTNNGCTGTTAGTCTTCTCCTACCCCCTCATGA
back to top