CX675249

Overview
NameCX675249
Unique NameCX675249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.345e-35
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  275 DEEDSTM--NEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 706
            DEEDS    N GE  +   H + L+ +GVHA DI +I PY  QV LL+  +S  +K   +EI +VDGFQGREKEA+I++ VRSN K EVGFL++ RR+NVAVTRARR   ++CD+ TV++  FLK L++YF EH E  +  EYL++
Sbjct:  501 DEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34
Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = -2
Query:  275 MEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 721
            +E ++++  S  N GE  +   H + L+ +GV A DI +I PY  QV LL+  +S  +K   +EI +VDGFQGREKEA+I++ VRSN K EVGFL++ RR+NVAVTRARR   ++CD+ TV++  FLK L++YF EH E  +  EYL++
Sbjct:  498 LELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 72/148 (48.65%), Postives = 103/148 (69.59%), Query Frame = -2
Query:  275 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 718
            E ++++E S  N GE  +   H + L+ +GV A DI +++PY  QV LL+  +S   +   +EI +VDGFQGREKEA+I+S VRSN K EVGFL++ RR+NVAVTRARR   ++CD+ TV++  FLK L+EYF +H E  +  EYL++
Sbjct:  500 ELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLR--QSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDD 645          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 70/149 (46.98%), Postives = 103/149 (69.13%), Query Frame = -2
Query:  275 MEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 721
            +E ++++  S  N GE  +   H + L+ +GV A DI +I PY  QV LL+  +S  +K   +EI +VDGFQGREKEA++++ VRSN K EVGFL++ RR+NVAVTRARR   ++CD+ TV++  FL+ L++YF EH E  +  EYL++
Sbjct:  498 LELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTAFEYLDD 644          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = -2
Query:  281 DMEEKKDEED---STMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDG--FLKRLIEYFEEHAE--YLSGSEYL 724
            + +E  DE     S  NEGE  +   H + L    V  + IG+I+PY AQV  LK L   + KL ++EISTVDGFQGREK+ II+S+VRSN K EVGFL + RR+NVA+TR RRQ  +V + E +   G  +LK   E+ EE+A+  Y +  +YL
Sbjct:  529 EFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYLKSWSEWCEENADVRYPNIDDYL 683          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 58/132 (43.94%), Postives = 90/132 (68.18%), Query Frame = -2
Query:  308 EDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS-SDGFLKRLIEYFEEHA 700
            +DS  N  EA++   H   L+++G+ A DI ++TPY AQV L++ L    +K   +E+ +VD  QGREKEAII S+VRSN  +EVGFL+++RR+NVA+TR +R  C++ D+ TV  +  F  + +++ EE+A
Sbjct:  520 QDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLK--EKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENA 649          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: DNA2_YEAST (DNA replication ATP-dependent helicase DNA2 OS=Saccharomyces cerevisiae GN=DNA2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 54/134 (40.30%), Postives = 83/134 (61.94%), Query Frame = -2
Query:  314 KKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEE 712
            ++ E+D+  N GEAE+ +   + ++ SGV   DIG++T Y AQ+ LLK + +K +    +EI T D FQGR+K+ IIISMVR NS+   G  L + RR+NVA+TRA+ +  ++    T+ S   +K  +   EE
Sbjct: 1328 EQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNK-NVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKSFVNLLEE 1460          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = -2
Query:  290 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL-----KNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 718
            EE      S +N  EA +      + ++ G     IGIITPY  Q   +     K  KL     K++E+++VD FQGREK+ II+S VRSN  + +GFL D RR+NVA+TRAR    ++ + + +S D     LI +F+     + GS
Sbjct:  824 EEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGS 971          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = -2
Query:  293 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----VVLLKILRSKDDKL-KNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 718
            EE      S +N  EA        +L+++G     IGIITPY  Q    V  ++   S   KL + +EI++VD FQGREK+ II+S VR+N  + +GFL+D RR+NVA+TRAR    +V + + +S       L+ Y++E    + G
Sbjct:  761 EEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEG 907          
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = -2
Query:  293 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL-----KNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 718
            EE      S +N  EA          ++SGV  S IG+ITPY  Q   +    +++  L     K +E+++VD FQGREK+ II+S VRSN  + +GFL+D RR+NVA+TRAR    ++ + + +S       L+ +++EH   + G
Sbjct:  775 EEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEG 921          
The following BLAST results are available for this feature:
BLAST of CX675249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SMBP2_MESAU2.345e-3552.05DNA-binding protein SMUBP-2 OS=Mesocricetus auratu... [more]
SMBP2_RAT2.592e-3448.32DNA-binding protein SMUBP-2 OS=Rattus norvegicus G... [more]
SMBP2_HUMAN9.851e-3448.65DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
SMBP2_MOUSE1.287e-3346.98DNA-binding protein SMUBP-2 OS=Mus musculus GN=Igh... [more]
HCS1_YEAST7.560e-2646.45DNA polymerase alpha-associated DNA helicase A OS=... [more]
HCS1_SCHPO3.752e-2543.94DNA polymerase alpha-associated DNA helicase A OS=... [more]
DNA2_YEAST1.527e-1840.30DNA replication ATP-dependent helicase DNA2 OS=Sac... [more]
RENT1_DICDI2.604e-1837.16Regulator of nonsense transcripts 1 OS=Dictyosteli... [more]
RENT1_MOUSE9.896e-1837.41Regulator of nonsense transcripts 1 OS=Mus musculu... [more]
RENT1_ARATH9.896e-1836.05Regulator of nonsense transcripts 1 homolog OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60H03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60H03-O6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675249 ID=CX675249; Name=CX675249; organism=Citrus sinensis; type=EST; length=728bp
TTTTCTTGTAAAACTCATCAACTATCATTATTATCAGCACATGTACACTA
TACCTGGGTTTAGCATGATGCATAACACAGATGAATGGGGTGTGTCTAAC
CAGCCTATACTTCATATGACTAGGCAACAACCGCAAGAAATTCAACTTCT
GGATAAAATCAACTTTCTACTGCTCCAATTTTCAGTAATTTGATACGCTA
TGAATCATATTCTACCATCAATAGATTGAAATGGCCCAACAGAGTTTACA
TCGAGTCTTCTTGGCAGATCCTTATTCATTGAGATACTCTGAGCCACTTA
GATACTCAGCATGCTCTTCAAAATACTCAATCAATCGCTTTAAGAACCCA
TCACTACTTACTGTCTCAGTGTCGCAGACAAGACAACACTGTCTTCTTGC
TCGTGTCACTGCCACGTTCATTCGTCTGCGGTCACTCAGAAACCCCACCT
CTTTCTTTGAGTTTGATCGAACCATTGAAATAATAATCGCCTCCTTCTCC
CGCCCTTGGAAACCATCAACTGTTGAGATCTCCATATTTTTTAGCTTATC
ATCCTTACTTCTCAATATCTTCAGTAAGACAACCTGCGCAGCATAAGGGG
TAATAATTCCAATATCAGAAGCATGGACTCCACTTTGAATCAATCTCTTT
GCATGGGCCATGGCAACCTCAGCTTCACCTTCATTCATTGTGCTATCTTC
TTCGTCCTTCTTTTCTTCCATGTCACAT
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