CX675249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.345e-35 Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = -2 Query: 275 DEEDSTM--NEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 706 DEEDS N GE + H + L+ +GVHA DI +I PY QV LL+ +S +K +EI +VDGFQGREKEA+I++ VRSN K EVGFL++ RR+NVAVTRARR ++CD+ TV++ FLK L++YF EH E + EYL++ Sbjct: 501 DEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34 Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = -2 Query: 275 MEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 721 +E ++++ S N GE + H + L+ +GV A DI +I PY QV LL+ +S +K +EI +VDGFQGREKEA+I++ VRSN K EVGFL++ RR+NVAVTRARR ++CD+ TV++ FLK L++YF EH E + EYL++ Sbjct: 498 LELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34 Identity = 72/148 (48.65%), Postives = 103/148 (69.59%), Query Frame = -2 Query: 275 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 718 E ++++E S N GE + H + L+ +GV A DI +++PY QV LL+ +S + +EI +VDGFQGREKEA+I+S VRSN K EVGFL++ RR+NVAVTRARR ++CD+ TV++ FLK L+EYF +H E + EYL++ Sbjct: 500 ELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLR--QSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDD 645
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33 Identity = 70/149 (46.98%), Postives = 103/149 (69.13%), Query Frame = -2 Query: 275 MEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 721 +E ++++ S N GE + H + L+ +GV A DI +I PY QV LL+ +S +K +EI +VDGFQGREKEA++++ VRSN K EVGFL++ RR+NVAVTRARR ++CD+ TV++ FL+ L++YF EH E + EYL++ Sbjct: 498 LELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTAFEYLDD 644
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26 Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = -2 Query: 281 DMEEKKDEED---STMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDG--FLKRLIEYFEEHAE--YLSGSEYL 724 + +E DE S NEGE + H + L V + IG+I+PY AQV LK L + KL ++EISTVDGFQGREK+ II+S+VRSN K EVGFL + RR+NVA+TR RRQ +V + E + G +LK E+ EE+A+ Y + +YL Sbjct: 529 EFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYLKSWSEWCEENADVRYPNIDDYL 683
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25 Identity = 58/132 (43.94%), Postives = 90/132 (68.18%), Query Frame = -2 Query: 308 EDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS-SDGFLKRLIEYFEEHA 700 +DS N EA++ H L+++G+ A DI ++TPY AQV L++ L +K +E+ +VD QGREKEAII S+VRSN +EVGFL+++RR+NVA+TR +R C++ D+ TV + F + +++ EE+A Sbjct: 520 QDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLK--EKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENA 649
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: DNA2_YEAST (DNA replication ATP-dependent helicase DNA2 OS=Saccharomyces cerevisiae GN=DNA2 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18 Identity = 54/134 (40.30%), Postives = 83/134 (61.94%), Query Frame = -2 Query: 314 KKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEISTVDGFQGREKEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEE 712 ++ E+D+ N GEAE+ + + ++ SGV DIG++T Y AQ+ LLK + +K + +EI T D FQGR+K+ IIISMVR NS+ G L + RR+NVA+TRA+ + ++ T+ S +K + EE Sbjct: 1328 EQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNK-NVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKSFVNLLEE 1460
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18 Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = -2 Query: 290 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL-----KNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 718 EE S +N EA + + ++ G IGIITPY Q + K KL K++E+++VD FQGREK+ II+S VRSN + +GFL D RR+NVA+TRAR ++ + + +S D LI +F+ + GS Sbjct: 824 EEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGS 971
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18 Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = -2 Query: 293 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----VVLLKILRSKDDKL-KNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 718 EE S +N EA +L+++G IGIITPY Q V ++ S KL + +EI++VD FQGREK+ II+S VR+N + +GFL+D RR+NVA+TRAR +V + + +S L+ Y++E + G Sbjct: 761 EEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEG 907
BLAST of CX675249 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18 Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = -2 Query: 293 EEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL-----KNMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 718 EE S +N EA ++SGV S IG+ITPY Q + +++ L K +E+++VD FQGREK+ II+S VRSN + +GFL+D RR+NVA+TRAR ++ + + +S L+ +++EH + G Sbjct: 775 EEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEG 921 The following BLAST results are available for this feature:
BLAST of CX675249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675249 ID=CX675249; Name=CX675249; organism=Citrus sinensis; type=EST; length=728bpback to top |