CK937070

Overview
NameCK937070
Unique NameCK937070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12563 contig Csv1_Contig12563:24..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: BLC_CITFR (Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.343e-18
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  128 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGAD-TRATYTLNEDGTVHVRNETWSDGKR--GSIEGTAY-KADPKSDEAKLKVKFYVP 385
            K + VV   D KRY+G WYEIA F  R +   G D   ATY+L +DG ++V N+ ++  +      EG AY   DP +  A LKV F+ P
Sbjct:   26 KGVTVVNNFDAKRYLGTWYEIARFDHRFE--RGLDKVTATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGDPST--AALKVSFFGP 111          

HSP 2 Score: 55.0694 bits (131), Expect = 5.343e-18
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  405 PVVGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 581
            P  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  Q++  AT EG++V+KL
Sbjct:  111 PFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFEVNKL 169          
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: BLC_ECOLI (Outer membrane lipoprotein blc OS=Escherichia coli (strain K12) GN=blc PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.675e-17
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 3
Query:  405 PVVGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSK 578
            P  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  +++  AT EG+DVSK
Sbjct:  111 PFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168          

HSP 2 Score: 50.447 bits (119), Expect = 5.675e-17
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 2
Query:  140 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLKVKFYVP 385
            VV   D KRY+G WYEIA F  R + +      ATY+L +DG ++V N+ ++   G     EG AY     +  A LKV F+ P
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPT-RAALKVSFFGP 111          
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: BLC_ECO57 (Outer membrane lipoprotein blc OS=Escherichia coli O157:H7 GN=blc PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.675e-17
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 3
Query:  405 PVVGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSK 578
            P  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  +++  AT EG+DVSK
Sbjct:  111 PFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168          

HSP 2 Score: 50.447 bits (119), Expect = 5.675e-17
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 2
Query:  140 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLKVKFYVP 385
            VV   D KRY+G WYEIA F  R + +      ATY+L +DG ++V N+ ++   G     EG AY     +  A LKV F+ P
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPT-RAALKVSFFGP 111          
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: YR877_MIMIV (Putative lipocalin R877 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R877 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.640e-16
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 2
Query:  122 SKKEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKA 337
            SK+++     LDI+RYMG WYEIA  P+  Q K   ++ A Y L E   + V N    +G+  S+ GTA  A
Sbjct:   18 SKRDVVSQSSLDIQRYMGTWYEIARLPTSFQ-KGCVNSTANYQLLEPNKIQVTNNCEINGRINSVTGTAIPA 88          

HSP 2 Score: 51.6026 bits (122), Expect = 4.640e-16
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  420 YWVLYIDDNYQYALI--GEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHR 587
            Y V++ID+NYQYA++  G  T   LWIL R  +++++ YNQLV    ++GYDV+ L R
Sbjct:  114 YNVIFIDENYQYAIVSGGNDT---LWILSRFKNINQSTYNQLVTIVYNQGYDVNNLIR 168          
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: APOD_MOUSE (Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 6.708e-14
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  140 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGKRGSIEGTAYKADPKSDEAKLKVKFY--VPP 388
            V    D+K+Y+GRWYEI   P+  +   G   +A Y+L E+G + V N+  S DG    ++G A K    S+ AKL+V+F+  +PP
Sbjct:   33 VQENFDVKKYLGRWYEIEKIPASFE--KGNCIQANYSLMENGNIEVLNKELSPDGTMNQVKGEA-KQSNVSEPAKLEVQFFPLMPP 115          

HSP 2 Score: 41.2022 bits (95), Expect = 6.708e-14
Identity = 26/80 (32.50%), Postives = 39/80 (48.75%), Query Frame = 3
Query:  390 FFPIIPVVGNYWVLYIDDNYQYALIGEPTR-------KYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNP 608
            FFP++P    YW+L  D    YAL+   T         ++WIL R P++       L +  TS G D+ K+  T Q++ P
Sbjct:  109 FFPLMPPAP-YWILATDYE-NYALVYSCTTFFWLFHVDFVWILGRNPYLPPETITYLKDILTSNGIDIEKMTTTDQANCP 186          
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: BLC_VIBCH (Outer membrane lipoprotein blc OS=Vibrio cholerae GN=blc PE=3 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 7.103e-13
Identity = 21/60 (35.00%), Postives = 36/60 (60.00%), Query Frame = 3
Query:  405 PVVGNYWVLYID-DNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 581
            P  G+Y V  +D +NY YA +  P  +YLW+L R P ++  I ++ +E +   G+D ++L
Sbjct:  106 PFYGSYVVFELDRENYSYAFVSGPNTEYLWLLSRTPTVERGILDKFIEMSKERGFDTNRL 165          

HSP 2 Score: 41.5874 bits (96), Expect = 7.103e-13
Identity = 25/88 (28.41%), Postives = 44/88 (50.00%), Query Frame = 2
Query:  128 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLKVKFYVP 385
            + ++ V   ++  Y+G+WYE+A     +  +  +   A Y +  DG + V N  +S+  G+    EG AY  +  +D   LKV F+ P
Sbjct:   21 ESVKPVSDFELNNYLGKWYEVARL-DHSFERGLSQVTAEYRVRNDGGISVLNRGYSEEKGEWKEAEGKAYFVNGSTD-GYLKVSFFGP 106          
BLAST of CK937070 vs. ExPASy Swiss-Prot
Match: APOD_RAT (Apolipoprotein D OS=Rattus norvegicus GN=Apod PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.113e-11
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  140 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRN-ETWSDGKRGSIEGTAYKADPKSDEAKLKVKFY--VPP 388
            V    D+K+Y+GRWYEI   P   +   G   +A Y+L E+G + V N E   DG    +EG A K    S+ AKL+V+F+  +PP
Sbjct:   33 VQENFDVKKYLGRWYEIEKIPVSFE--KGNCIQANYSLMENGNIKVLNKELRPDGTLNQVEGEA-KQSNMSEPAKLEVQFFSLMPP 115          

HSP 2 Score: 33.4982 bits (75), Expect = 2.113e-11
Identity = 24/80 (30.00%), Postives = 36/80 (45.00%), Query Frame = 3
Query:  390 FFPIIPVVGNYWVLYIDDNYQYALIGEPTR-------KYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNP 608
            FF ++P    YW+L  D    YAL+   T         Y+WIL R P++       L    TS   D++K+    Q++ P
Sbjct:  109 FFSLMPPAP-YWILATDYE-SYALVYSCTTFFWFFHVDYVWILGRNPYLPPETITYLKYILTSNDIDIAKITTKDQANCP 186          
The following BLAST results are available for this feature:
BLAST of CK937070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BLC_CITFR5.343e-1841.11Outer membrane lipoprotein blc OS=Citrobacter freu... [more]
BLC_ECOLI5.675e-1743.10Outer membrane lipoprotein blc OS=Escherichia coli... [more]
BLC_ECO575.675e-1743.10Outer membrane lipoprotein blc OS=Escherichia coli... [more]
YR877_MIMIV4.640e-1640.28Putative lipocalin R877 OS=Acanthamoeba polyphaga ... [more]
APOD_MOUSE6.708e-1438.37Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1[more]
BLC_VIBCH7.103e-1335.00Outer membrane lipoprotein blc OS=Vibrio cholerae ... [more]
APOD_RAT2.113e-1139.53Apolipoprotein D OS=Rattus norvegicus GN=Apod PE=1... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_F04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937070 ID=CK937070; Name=CK937070; organism=Citrus sinensis; type=EST; length=669bp
GGGAGCGGAGGCAGCAACAGCAACAACAACNNNAACAACAGGAGCTAGTA
CTCATTCTGATAAACCCAAGCTCTGTTATTCCGAAAAGCAGATTGAAACT
TTGTCAGCAAAAAAAATGGCCTCCAAGAAAGAGATGGAAGTGGTGAGGGG
TCTTGACATAAAGCGTTACATGGGGAGATGGTATGAGATAGCTTCATTTC
CATCAAGGAATCAGCCCAAGAATGGAGCGGATACGAGGGCTACTTACACT
TTGAATGAAGATGGGACAGTGCATGTGCGGAATGAGACATGGAGTGATGG
CAAAAGAGGGTCCATCGAAGGCACTGCTTACAAGGCTGATCCTAAGAGCG
ATGAGGCCAAGCTTAAGGTCAAGTTTTATGTGCCTCCCTTTTTTCCCCAT
CATTCCTGTTGTTGGCAACTACTGGGTTTTGTATATTGATGATAATTATC
AGTATGCTTTGATTGGTGAGCCTACCAGGAAATATCTCTGGATTTTATGC
AGGGAGCCTCATATGGATGAAGCGATCTACAATCAGCTAGTGGAGAAGGC
TACAAGTGAAGGGTATGATGTGAGCAAACTGCACAGAACACCACAGAGTG
ATAACCCACCAGAGGCAGAAGAAAGCCCCCAGGACACCAAAGGCATTTGG
TGGNNNNAATCCATTTTCG
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