CK937068

Overview
NameCK937068
Unique NameCK937068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937068_ssr186 microsatellite CK937068_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937068 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 3 
Query:   75 MDIVFSNSTLLFRQQPLVAPVRTVT-GTHRQQNIIXXXXXXXXXXKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQ 443
            MD + S+ST+L R   L  PVR+ +  T      +             LL  S      +  ++S+      +RCG   GI EI ESEF +TVL+S +PVLVEFVA WCGPC+L+ PA+E L+Q
Sbjct:    1 MDSIVSSSTILMRSY-LTPPVRSCSPATSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSV------IRCG---GIKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQ 114
The following BLAST results are available for this feature:
BLAST of CK937068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRXX_ARATH8.047e-1340.32Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_F02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937068 ID=CK937068; Name=CK937068; organism=Citrus sinensis; type=EST; length=664bp
GCGGGGATCACNNNAAACTGAAAACAATTCAAANNNAAAAGAAAATGCTC
TAAAAATCTTTAATCACTTGCAAAATGGATATCGTCTTCTCCAACTCCAC
TTTATTGTTCAGACAACAACCACTGGTTGCTCCTGTTCGTACAGTTACTG
GGACCCACAGGCAACAGAACATCATCACCAGCGCTACAACAACAACAACG
TCGTCAAAGAATCAGCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAA
GTCTTATAATAATTCGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTG
CTAGCAGTGGCATAACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTC
TTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGG
TCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATGGCTCGCCCAGTTTTCTT
TTTGTGTCATTCATCAGAGCAATGCTTTGCAGCTTGGTTCATGCCGCCTC
TGTCTAGTGTATCTGAAATTATGTCTTTATCTATGTGCTGGAAATTTGAT
ATAAGCTCTGAGTTTTTGATAAATTAAATATTTCGGAAGTAGGTCTACAT
AATTTTTGTAGTGATGTTGATGGAATGAATGGTATTTTGAATTTCTGGTT
CATACATTGGAAAA
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