CK937064

Overview
NameCK937064
Unique NameCK937064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11836 contig Csv1_Contig11836:52..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_CRIGR (Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  181 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPV-AVAPL 540
            A  LL++ T+   + S GD +P+Y+ CV +CE+  C GD   +H  F S            +P Y+    W C  DC+Y CM    G   + G +  ++HGKWPF R    QEP  AVA L
Sbjct:    6 ARLLLLTVTVGLAWGSQGDREPVYRDCVLRCEERNCSGD-ALKH--FRS-----------LQPIYMSLAGWTCRDDCKYECMWITVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASL 112          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_MOUSE (Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 43/121 (35.54%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  181 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPV-AVAPL 540
            A  LL++  +     S GD +P+Y+ CV +CE+  C GD   +H  F S           ++P Y+    W C  DC+Y CM    G   + G +  ++HGKWPF R    QEP  AVA L
Sbjct:    6 APLLLLTLAVGLAGGSQGDREPVYRDCVLRCEERNCSGD-ALKH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWFTVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASL 112          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_XENTR (Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 35/102 (34.31%), Postives = 48/102 (47.06%), Query Frame = 1
Query:  223 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPVA 528
            AS GD +P+Y+ CV  CE+  C G +                 +  ++P Y+R   W C  DCRY CM        K G +  ++HGKWPF R    QEP +
Sbjct:   15 ASRGDREPVYRDCVTLCERNNCTGSRLTD--------------FRAEQPLYMRVTGWTCLDDCRYQCMWYTVSLYLKEGHEVPQFHGKWPFSRFLFFQEPAS 102          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_HUMAN (Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 40/118 (33.90%), Postives = 55/118 (46.61%), Query Frame = 1
Query:  175 LIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPVA 528
            L A  +L++        S GD +P+Y+ CV QCE+  C G     H  F S           ++P Y+    W C  DC+Y CM    G   + G K  ++HGKWPF R    QEP +
Sbjct:    4 LAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGG-ALNH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPAS 107          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_DANRE (Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 35/102 (34.31%), Postives = 48/102 (47.06%), Query Frame = 1
Query:  223 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPVA 528
            AS GD +P+Y+ CV+ C +  C G +      F S            +PPY+    W C  DCRY CM    G  +  G    ++HGKWPF R    +EP +
Sbjct:   16 ASQGDKEPVYRDCVKHCVRANCTGARLR---GFQST-----------QPPYMALTGWTCRDDCRYQCMWTTVGLYQAEGYSIPQFHGKWPFARFLCFEEPAS 103          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_XENLA (Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  223 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPVA 528
            AS GD +P+Y+ CV  C++  C G   F+  +F +           Q+P Y+R   W C  DCRY CM        K G +  ++HGKWPF R    QEP +
Sbjct:   15 ASRGDREPVYRDCVTVCDQNNCTG---FRLRDFRA-----------QQPLYMRLTGWTCLDDCRYKCMWYTVSLYLKEGHEVPQFHGKWPFSRFLFFQEPAS 102          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_BOVIN (Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 38/116 (32.76%), Postives = 55/116 (47.41%), Query Frame = 1
Query:  181 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPVA 528
            A  +L++        S GD +P+Y+ CV +CE+  C G    +H  F S           ++P Y+    W C  DC+Y CM    G   + G K  ++HGKWPF R    QEP +
Sbjct:    6 ARLVLLAGAAALASGSQGDREPVYRDCVLRCEERNCSGG-ALKH--FRS-----------RQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGQKVPQFHGKWPFSRFLCFQEPAS 107          
BLAST of CK937064 vs. ExPASy Swiss-Prot
Match: PGAP3_DROME (Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=CG3271 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 40/126 (31.75%), Postives = 61/126 (48.41%), Query Frame = 1
Query:  160 MAHSHLIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPI--DGPWYLQEPPYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGXQEPVAV 531
            M+   L A+ LL+   + A  AS+GD    +  C + CE+T C           S+DG  I      + Q+  + R  QW C+ +C+Y CM        + G    +++GKWPF R+ G QEP +V
Sbjct:    1 MSSRSLSAIVLLLGALVTACLASNGDRTQFFHNCRQNCERTNC-----------SADGLEIQEQAVKFYQQSVFDRLFQWSCADECQYGCMWRTVFAFFERGWPIPQFYGKWPFLRLLGMQEPASV 115          
The following BLAST results are available for this feature:
BLAST of CK937064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PGAP3_CRIGR6.296e-1436.36Post-GPI attachment to proteins factor 3 OS=Cricet... [more]
PGAP3_MOUSE6.961e-1335.54Post-GPI attachment to proteins factor 3 OS=Mus mu... [more]
PGAP3_XENTR1.187e-1234.31Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_HUMAN1.187e-1233.90Post-GPI attachment to proteins factor 3 OS=Homo s... [more]
PGAP3_DANRE1.187e-1234.31Post-GPI attachment to proteins factor 3 OS=Danio ... [more]
PGAP3_XENLA1.551e-1236.27Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_BOVIN4.512e-1232.76Post-GPI attachment to proteins factor 3 OS=Bos ta... [more]
PGAP3_DROME1.313e-1131.75Post-GPI attachment to proteins factor 3 OS=Drosop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_G07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937064 ID=CK937064; Name=CK937064; organism=Citrus sinensis; type=EST; length=541bp
TCGACTCGCTCCTTTTCTCTTCTCTCTCCCACCGAGTCTAAATTCCAACA
ACGCAACTCCTCACTCGCTCTTGTAACAAAACTCAAATCACCGGAGCGTC
GATTATGTAGAAAATCTCTTAAAACGTTCCTCTGTTGACTTCCACTTTAC
ACGATTCAGATGGCTCACAGTCACTTAATTGCTCTCTTTCTTTTAATTTC
ATGTACGCTTCCAGCTCTCTACGCAAGCGACGGTGACGCTGATCCGATTT
ACAAGGGTTGTGTGGAGCAGTGTGAGAAAACTGGATGCGTGGGGGACAAA
TGCTTCCAACACTGTAACTTTTCATCTGATGGAAAACCTATTGATGGGCC
ATGGTATCTGCAAGAACCACCCTATCTCCGGTGGAAACAATGGGATTGCA
GCAGTGACTGTCGATATCACTGTATGCTTGCTAGGGAAGGGGAGAGAGAA
AAAGTTGGTGACAAGCCTGTCAAGTATCATGGGAAATGGCCATTCCGCCG
TGTTTACGGNNNNCAGGAACCCGTTGCTGTTGCTCCTCTCT
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