CK937045

Overview
NameCK937045
Unique NameCK937045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2242 contig Csv1_Contig2242:46..859. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.890e-96
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.076e-86
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII TPEVQDINSFSR ESLQE+YGI+W+L PI   V+ ITIGVLVIVWLEREISAGIQQRIGPEYA P GILQALADGTKLL KENLLPSRG+S LFSIGPS+AVI+ILLSYSVIPFSY LVLADLN+G+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTPEVQDINSFSRFESLQEIYGIVWMLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPFGILQALADGTKLLLKENLLPSRGDSPLFSIGPSMAVISILLSYSVIPFSYRLVLADLNVGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.679e-85
Identity = 162/184 (88.04%), Postives = 171/184 (92.93%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII TPEVQDINSFSRLE L+EVYGI+W+L PI   VL ITIGVL IVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY +IPF  NLVL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTPEVQDINSFSRLEYLKEVYGIIWMLVPIFTPVLGITIGVLAIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLIIPFGSNLVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_HELAN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus GN=ndhA PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.488e-84
Identity = 163/184 (88.59%), Postives = 171/184 (92.93%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T EVQ INSFSRLESL+EVYGI+WVL PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPF Y LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRLESLKEVYGIIWVLIPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFGYRLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_LACSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa GN=ndhA PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.329e-84
Identity = 162/184 (88.04%), Postives = 172/184 (93.48%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T EVQ INSFS LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPFSY+LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFSILESLKEVYGIIWMLIPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFSYHLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lotus japonicus GN=ndhA PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.654e-84
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T EVQDINSFSRLES +EVYG+LWVLAPI I VL ITI VL IVWLEREISAG+QQRIGPEYA P G+LQALADGTKLLFKENL+PSRG+  LFSIGPSI+VI+IL++Y VIPFSYN VL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQDINSFSRLESFKEVYGVLWVLAPILIIVLGITISVLAIVWLEREISAGMQQRIGPEYAGPFGVLQALADGTKLLFKENLIPSRGDIRLFSIGPSISVISILITYLVIPFSYNFVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium hirsutum GN=ndhA PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.654e-84
Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T EV+DINSF  LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKEN+LPSRGN+ LFSIGP+IAVI+ILLS+SVIPFS  L+LADLNIGIFLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYTTEVEDINSFYTLESLKEVYGIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGNTRLFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.654e-84
Identity = 161/184 (87.50%), Postives = 170/184 (92.39%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T +VQDI+SFSRLE L+E YGILWVL PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLG+LQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYSVIPF Y LVLADL IG+FLWIAISS+APIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTSQVQDIHSFSRLEFLKEFYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_COFAR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndhA PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.654e-84
Identity = 161/184 (87.50%), Postives = 170/184 (92.39%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T E+Q INSF +LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYSVIPF Y LVLADL IG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTELQAINSFFKLESLKEVYGIIWILIPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDARLFSIGPSIAVISILLSYSVIPFGYRLVLADLTIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK937045 vs. ExPASy Swiss-Prot
Match: NU1C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium barbadense GN=ndhA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.645e-84
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 2 
Query:   26 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 577
            MII T EV+DINSF  LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLG+LQALADGTKLLFKEN+LPSRGN+ LFSIGP+IAVI+ILLS+SVIPFS  L+LADLNIGIFLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYTTEVEDINSFYTLESLKEVYGIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGLLQALADGTKLLFKENILPSRGNTRLFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
The following BLAST results are available for this feature:
BLAST of CK937045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CITSI2.890e-96100.00NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PELHO2.076e-8688.59NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_VITVI6.679e-8588.04NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HELAN1.488e-8488.59NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LACSA4.329e-8488.04NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LOTJA5.654e-8485.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_GOSHI5.654e-8486.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CUCSA5.654e-8487.50NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_COFAR5.654e-8487.50NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_GOSBA9.645e-8486.41NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_A09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937045 ID=CK937045; Name=CK937045; organism=Citrus sinensis; type=EST; length=814bp
GGGATGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTAC
AAGATATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGG
ATCCTATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAAT
CGGTGTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATAC
AACAGCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCT
TTAGCCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAG
AGGAAATAGTAGTTTATTCAGTATTGGTCCATCTATAGCAGTCATAGCAA
TTCTACTAAGTTATTCAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCT
GACCTCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCC
TATTGGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTT
TAGGTGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTA
ACTTTATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAG
CTTTTCGTTCTAGAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTA
TTCATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATAT
GGGTGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTC
ATTTCCTATGTGCAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAG
GAAGCCCTTACCCC
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