CK937044

Overview
NameCK937044
Unique NameCK937044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:931..1702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.500e-91
Identity = 160/212 (75.47%), Postives = 183/212 (86.32%), Query Frame = 3
Query:   66 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 701
            MA+EICVKAAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV++ DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK E++YVI+GW PKVN
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 61/217 (28.11%), Postives = 106/217 (48.85%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y +  +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC6_HUMAN (Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.172e-17
Identity = 59/224 (26.34%), Postives = 106/224 (47.32%), Query Frame = 3
Query:   48 SLNSAKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            +L  +++A++  ++A      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL+ L+ LD +L +                 G  F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  463 ALGCSRIAIKKYLRAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 685          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17
Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEEKYPEPS----LTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +                 G  F+ G+ +T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  404 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNSPLPDEVDAYSTEDVAVSGRKFLDGDDLTLADCNLLPKLHIIKIVAKKYRDFEFPPEMTGIWRYLNNAYARDEFINT 618          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 60/216 (27.78%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  379 ITLFVKAGSDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNSPLPDEIDAYSTEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRGFEFPSEMTGIWRYLNNAYARDEFTNT 593          
BLAST of CK937044 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 59/216 (27.31%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   72 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVRFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 653
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  363 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 577          
The following BLAST results are available for this feature:
BLAST of CK937044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHAR1_ARATH1.500e-9175.47Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN2.889e-1829.03Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT4.928e-1829.03Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE4.928e-1829.03Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC1_BOVIN2.446e-1728.11Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC6_HUMAN4.172e-1726.34Chloride intracellular channel protein 6 OS=Homo s... [more]
CLIC1_RABIT5.449e-1729.03Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC6_RABIT1.585e-1627.78Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC6_RAT4.613e-1627.78Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_MOUSE6.024e-1627.31Chloride intracellular channel protein 6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_A08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937044 ID=CK937044; Name=CK937044; organism=Citrus sinensis; type=EST; length=772bp
GCGGGGGTTGTNNNGTTTTCACTAACAGCAANNNACACTCTCTCTGATCA
CTCAATTCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGG
CGCTCCTGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTA
CTTTGGAGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGT
GACAAGCCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGT
GGTAAGGTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAA
TTATTGAGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTT
GCCTCTGTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAG
CAAGGACCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAG
CATTGGATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAG
AAGGTCACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCA
GGTAGCTCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTC
ATGTCCATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAG
ACTAAGGCTGAAAAGCAATACGTGATTGCAGGATGGGTGCCGAAGGTCAA
TGCATGAACTAGTTCTAAGCTATGCGGTGTTTGAAATCTAGCTAATGAAA
TGCGAGTAATGTATGTGTGAGA
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