CK937036

Overview
NameCK937036
Unique NameCK937036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3902 contig Csv1_Contig3902:248..983. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_BUXMI (30S ribosomal protein S4, chloroplastic OS=Buxus microphylla GN=rps4 PE=3 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.151e-100
Identity = 183/200 (91.50%), Postives = 190/200 (95.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSKRPRAGSD RNQ RS K+SQYRIRLEEKQKLRFHYGLTERQLLKYVRIA KAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT +D+ KSR+L+QNYLDSS HEELPKHLTL +FQYKGLVNQIIDS+WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_PLAOC (30S ribosomal protein S4, chloroplastic OS=Platanus occidentalis GN=rps4 PE=3 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.370e-99
Identity = 182/200 (91.00%), Postives = 190/200 (95.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSK P+AGSD RNQLRS K+SQYRIRLEEKQKLRFHYGLTERQLLKYVRIA KAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT RD+ KSR+L+QNYLDSS HEELPKHLTL +FQYKGLVNQIIDS+WVGL+INELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKSPKAGSDLRNQLRSGKRSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSSHEELPKHLTLHSFQYKGLVNQIIDSKWVGLQINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_EUCGG (30S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps4 PE=3 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.370e-99
Identity = 182/200 (91.00%), Postives = 188/200 (94.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSKRPRAGSD RNQ RS KKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIA KAKGSTG VLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG IVDIPSYRCKPRDIIT RDD KSR+++QNY DSS HEE+PKHLTL  FQYKGLVNQIIDS+W+GLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITARDDQKSRAMIQNYFDSSPHEEVPKHLTLHPFQYKGLVNQIIDSKWIGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_NANDO (30S ribosomal protein S4, chloroplastic OS=Nandina domestica GN=rps4 PE=3 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.408e-98
Identity = 181/200 (90.50%), Postives = 187/200 (93.50%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSKRP  GSD RNQ RS K+SQYRIRLEEKQKLRFHYGLTERQLLKYVRIA KAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT RD+ KSR+L+QNYLDSS HEELPKHLTL + QYKGLVNQIIDS+WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPTPGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSPHEELPKHLTLHSSQYKGLVNQIIDSKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_GOSHI (30S ribosomal protein S4, chloroplastic OS=Gossypium hirsutum GN=rps4 PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.757e-98
Identity = 180/200 (90.00%), Postives = 186/200 (93.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSKRPRAGSD RNQ R  KKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTG VLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR VDIPSYRCKPRDII+ RD+ KSR+L+QNYLDSS +EELPKHLT    QYKGLVNQIID +WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRTVDIPSYRCKPRDIISARDEQKSRTLIQNYLDSSTNEELPKHLTFHTLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_GOSBA (30S ribosomal protein S4, chloroplastic OS=Gossypium barbadense GN=rps4 PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.757e-98
Identity = 180/200 (90.00%), Postives = 186/200 (93.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSKRPRAGSD RNQ R  KKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTG VLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR VDIPSYRCKPRDII+ RD+ KSR+L+QNYLDSS +EELPKHLT    QYKGLVNQIID +WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRTVDIPSYRCKPRDIISARDEQKSRTLIQNYLDSSTNEELPKHLTFHTLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_CALFG (30S ribosomal protein S4, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps4 PE=3 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.675e-97
Identity = 179/200 (89.50%), Postives = 186/200 (93.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLTSKRPR+GSD RNQ RS KKSQYRIRLEEKQKLRFHYGLTERQLL+YVRIA KAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT RD+ +SR+L+QNYLDS  HEELPKHLT    QYKGLVNQIIDS+WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRSGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQRSRALIQNYLDSPSHEELPKHLTFHPSQYKGLVNQIIDSKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_NICTO (30S ribosomal protein S4, chloroplastic OS=Nicotiana tomentosiformis GN=rps4 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.857e-97
Identity = 179/200 (89.50%), Postives = 187/200 (93.50%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLT+K+PRAGSD RNQ RS KKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT +D+ KS++L+Q  LDSS HEELP HLTL  FQYKGLVNQIIDS+WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKKPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSKALIQISLDSSPHEELPNHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_ATRBE (30S ribosomal protein S4, chloroplastic OS=Atropa belladonna GN=rps4 PE=3 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.732e-97
Identity = 179/200 (89.50%), Postives = 186/200 (93.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLT+K+PR GSD RNQ RS KKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT +D+ KSR+L+Q  LDSS HEELP HLTL  FQYKGLVNQIIDS+WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKKPRTGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSSPHEELPNHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQ 200
[Close]
BLAST of CK937036 vs. ExPASy Swiss-Prot
Match: RR4_TOBAC (30S ribosomal protein S4, chloroplastic OS=Nicotiana tabacum GN=rps4 PE=3 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.366e-97
Identity = 179/200 (89.50%), Postives = 186/200 (93.00%), Query Frame = 3 
Query:  135 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDDPKSRSLVQNYLDSSHHEELPKHLTLRAFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQ 734
            MSRYRGPRFKKIRRLGALPGLT+K+PR GSD RNQ RS KKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTG VLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCKPRDIIT +D+ KSR+L+Q  LDSS HEELP HLTL  FQYKGLVNQIIDS+WVGLKINELLVVEYYSRQ
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKKPRNGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSSPHEELPNHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQ 200
The following BLAST results are available for this feature:
BLAST of CK937036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR4_BUXMI6.151e-10091.5030S ribosomal protein S4, chloroplastic OS=Buxus m... [more]
RR4_PLAOC1.370e-9991.0030S ribosomal protein S4, chloroplastic OS=Platanu... [more]
RR4_EUCGG1.370e-9991.0030S ribosomal protein S4, chloroplastic OS=Eucalyp... [more]
RR4_NANDO4.408e-9890.5030S ribosomal protein S4, chloroplastic OS=Nandina... [more]
RR4_GOSHI5.757e-9890.0030S ribosomal protein S4, chloroplastic OS=Gossypi... [more]
RR4_GOSBA5.757e-9890.0030S ribosomal protein S4, chloroplastic OS=Gossypi... [more]
RR4_CALFG1.675e-9789.5030S ribosomal protein S4, chloroplastic OS=Calycan... [more]
RR4_NICTO2.857e-9789.5030S ribosomal protein S4, chloroplastic OS=Nicotia... [more]
RR4_ATRBE3.732e-9789.5030S ribosomal protein S4, chloroplastic OS=Atropa ... [more]
RR4_TOBAC6.366e-9789.5030S ribosomal protein S4, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937036 ID=CK937036; Name=CK937036; organism=Citrus sinensis; type=EST; length=736bp
GGGGGGGGTCTGGAATTTGATACAAATCATCTTAGTATTCTTTGTAGTAC
AATACTTCAGCGGATTTTGCTTCATTTATCATGTAGCTCAGTTTTAATTT
AGGTTTATGAAATTCAATAAAATAAGGAGTCTTTATGTCACGTTACCGAG
GGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTGCCGGGACTAACG
AGTAAAAGGCCTAGAGCCGGAAGCGATTTTAGAAACCAATTGCGCTCCGT
AAAAAAATCTCAATATCGAATTCGTTTAGAAGAAAAACAAAAATTGCGTT
TTCATTATGGTCTTACAGAACGACAATTACTTAAATATGTTCGTATCGCC
AGAAAAGCCAAAGGGTCAACCGGTCTGGTTTTACTACAATTACTTGAAAT
GCGTTTGGATAACATTCTTTTTCGATTGGGTATGGCTTCAACTATTCCTC
AAGCCCGCCAATTGGTTAACCATCGACATATTTTAGTTAATGGTCGTATA
GTCGATATACCAAGTTATCGTTGCAAACCCCGAGATATTATTACAGTAAG
GGATGACCCAAAATCTAGATCTCTGGTTCAAAATTATCTTGATTCATCCC
ACCATGAGGAATTGCCAAAGCATTTGACTCTTCGCGCATTCCAATATAAA
GGATTAGTCAACCAAATAATAGATAGTCAATGGGTCGGTTTGAAAATAAA
TGAATTGCTTGTCGTAGAATATTATTCTCGTCAAAC
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